CI01000047_00235688_00240415 (TACO1)


Basic Information

Item Value
gene id CI01000047_00235688_00240415
gene name TACO1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 235516 ~ 240769 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_00235688_00240415.mRNA
AAAACTTCGGAACGATCCTAACGAACCTTAGGACTTTTATTTTGGCATTAGTTTGTTCACCGGTAATGACGTTTGTAGTGTTGCTGTCTCTTTTGCTCGTGTGGGATAAATTAGCCTTACAAAATAATTATGGCATAATTTGACATTACCGTTTTATTTATTTTCGCAAGTAACGATCACGGAATATATTGAATTATGGTCGTAAAACCGTTCTTGAAACTATCCAGTTAAAACGTGCATGGTAGAAGCTCAAGACGTGTAAGCCAAAGACAGCATGTCATTTTAAAGTTTGACCAAAGTCATTTGATTTTGGAAACTTAAATACTTGCTCATCTGTTTAGTGAGGGAAGGACAATGATAGGAGACATGATGCTGAGCGCTTTCAGGCTGACAGTGAGAGTGTCTGCAGCGGTTCAGAGAGGCTATCGGTGTCCAGCCCTCCATTCATGCAGAGCACTGCACTCGAGCCCTGTTCTCTGGGCAGGACATAACAAATGGTCCAAAGTGAAGGACATTAAAATACCCAAAGATGCTGCTCGAGCCCGTATGATTGCCAAGTACACCATGATGATTAGGATTGCAGTCAGAGAGGGAGGACCCAATCCAGAATTTAATGTTGCACTGGCACAACTTCTAGAGCAGTGTCGGAACAAGAATCTACCGAAAGCCACTGTAGAAGGAGCTATAAAAGGAGCCAAGTCAAAACCAGGAGTACAGTATCTTTATGAGGCCACTGGACCGGGCGGGTGCACGCTACTCATTGAGATTTTGACTGACAACAACACACGATCTCACAGTGAACTCAAACGTATCATGACGAAACATGGCGGGGCGCTGTGTGAAGGAGCGCGCCGTAACTTTGACAGGAAAGGTGTTGTGGCAGCATCCAGAGATGGGATCTCCTCTGAGAAAGCTCTAGAACTGGCCATTGAGGCAGGAGCTGAAGATGTGCAGGAGACGGAGGATGAGGAGGAGAGACCCATACTACAGTTTGTCTGTGACATGACGTCCATGAAGGCAGTGCGGAGTGCTCTAGAAAGTCTGGGCATTCACACGCTATCAGCCGGGCTGGAATTTGTTCCTCACACCCCCTCTCTCCTGACTCAGACTCAGCTAGAGACTGCGTTTACCCTGCTGGAGGCTCTCAATGACTGCCCTGATGTGGTCCGGGTATGGGATAACATCCACGCACAGAACTAGTGTTCACAATACTACAAGTCACAGATAGATGGACTAATTAATGATCTACATGCCTTAAGAGCAACTGGAAGAAAATGACCTGCTTGGCCAAATTTCATTGGACTTGGATTTTTTTTCTGTAATGATAAATGCTTGATTGACCTTGTTGATATATTTTCATCATGGCAATAAA

Function

symbol description
taco1 Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human TACO1 (translational activator of cytochrome c oxidase I).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K18189 TACO1; translational activator of cytochrome c oxidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_00235688_00240415.mRNA True 1372 mRNA 0.45 5 235516 240769

Neighbor

gene id symbol gene type direction distance location
CI01000047_00209567_00227765 NA coding downstream 7751 209497 ~ 227765 (-)
CI01000047_00160239_00163260 NA coding downstream 72236 158824 ~ 163280 (-)
CI01000047_00124354_00130228 DNAJC9 coding downstream 105130 124003 ~ 130386 (-)
CI01000047_00103238_00106878 NA coding downstream 128488 102352 ~ 107028 (-)
CI01000047_00099711_00100984 NA coding downstream 134532 99652 ~ 100984 (-)
CI01000047_00347663_00378777 NGFRB coding upstream 105964 346733 ~ 378777 (-)
CI01000047_00468782_00483200 MPP2B, MPP2 coding upstream 227639 468408 ~ 483200 (-)
CI01000047_00519408_00522108 PYYB coding upstream 278520 519108 ~ 522245 (-)
CI01000047_00532901_00545479 NDC80 coding upstream 290785 531554 ~ 545479 (-)
CI01000047_00546330_00551551 NA coding upstream 305187 545956 ~ 551551 (-)
G200279 NA non-coding downstream 24148 211101 ~ 211368 (-)
G200216 NA non-coding downstream 114369 78005 ~ 121147 (-)
G200247 NA non-coding downstream 163408 71907 ~ 72108 (-)
G200293 NA non-coding upstream 19197 259966 ~ 260170 (-)
G200298 NA non-coding upstream 26411 267180 ~ 267426 (-)
G200309 NA non-coding upstream 46189 286958 ~ 287477 (-)
G200310 NA non-coding upstream 46937 287706 ~ 288141 (-)
G200311 NA non-coding upstream 48117 288886 ~ 289110 (-)
G200299 NA other upstream 26761 267530 ~ 268035 (-)
G200472 NA other upstream 593172 833941 ~ 834471 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 1465299 1706068 ~ 1744282 (-)
G202733 NA other upstream 2891544 3132313 ~ 3133652 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038570 taco1 coding NW_003336978.1 KN150328.1 3117 ~ 12840 (+)