CI01000047_00347663_00378777 (NGFRB)


Basic Information

Item Value
gene id CI01000047_00347663_00378777
gene name NGFRB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 346733 ~ 378777 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_00347663_00378777.mRNA
GACTCGTGTCCTTCAGGGGCGTACACAGCCAGTGGAGAGTGTTGCAAACAATGCCAACCCGGGGAGGGGATGGTGAAGCCCTGCGGAGCGACACAGACAGTGTGTGACCCATGTCTTGACAGTGAGACGTTCTCTGAGAACTTCAGCCACACGGAGAAGTGCCAGCCGTGCACACCATGTTCCAAACTCATGCGCATGCTGACGCCCTGCACTGATGCCAACGATGCAGTGTGTGTCTGCGACTATGGGTATTTCTTCAGCACAGTGACAGGGCGCTGCGAGGCCTGCACAGTGTGTCCTCTGGGCCAGGGTGTGCTGATGCGCTGTAATTATGACCGTGACACAGTGTGTGAGGAGTGCCTGGATGAAACGTTTTCAGATCAGGAAACCTCTTTCGACCCCTGCCTGCCCTGCACACAGTGCGAACTGCCCGAGATGGAGTTGAAAAGCTGCACTTCTGTCAGTGATGCTATCTGCCAAGACAAGTTTCCACCTGACAGTCCTACGGAGAGCGTGACCACGGCTGACCCTGGGCGGACGAGACTCCCTGGGCTGAGCGACAACCTCATTCCCATCTACACCTCCATACTGGCTGCAGTGCTGTTGGGCCTGGTGGCCTTCATCATCTTTAAACGGTGGAACAGTTGTAAGCAGAATAAGCAAGGAGCCAATAATAGAGCTTGCAGTGCAAACCCCAGTCAGACTCCTTCTCCTGAGGGAGAGAAACTCCACAGTGACAGCGGCATCTCAGTGGACAGTCAGAGCCTACAGGAGGGCCAGGGGCCGCCACATACAGTGGTCAAGATAGATGGAAGTTCAGCCCTGTCCTTACCCTTACACACACGGGAGGAGGTTGAGAAACTGCTAAATCGTACCTGTGAAGGGGAGGAGTCAGGAGCCAACGAGGAAACCGATTGGTGCAGTCTGGCGGGGCTACTTGGATACAAAGAAGAACACATTGCTAATTTCAAGCAAGAAGAGAGGCCCATCCAGGCTCTTCTCTCTCATTGGGCAAGCCAGGATTCGGCTAATATTGATACGCTTTGTACAGCACTGAAGAAGATCAATAGGGAGGATATTGCGCAGAGCATCACAGTCAAACCAACTGCTACATCTACCGTATGAGAGAACAAACACACGCTTACAAAATTCACACAATTTCAAGTGTGCTTCCCAGCTGTAGGCTCCCAAATACACACCTTACATTGCCTTCAGCATACTTCAGTGTTGATGTATCACTGGTGAAGTTGATGTATCACTATATCCTTAACTTTAGGCTGTAAACTCAAGTGCCGTTTCCCTTTAAACCCTTGATTGTATGGCCAAACTATGTGCAAAGAATGCACCGTTTCTAAATATTGTTCGCATGTTCCTTTAATTTGAGGAAAGCCATATGGACTTGAACATGGATATTCATGTCTTTCCTGAAGATGTTCAGGATAAATGACTCAAAATCATTCATTTTACTTTTAACACATTTCAGTATCACAAATATACCAACTGCAAATCACTTCCAGCTTTAGCCAACCAATAATTACTCTTAATAATAGGTATAAGTTTAAAGAAAATTGTCTGCCTGTATTCAGTACAGAAACTGCTATGTAACATCCATAACGCATATGCTAATGATATGTCAAACGTGGCCAGTTCAGTCATTTGCTAAGTGTACCATAACCACAAACCATATCCACTGATTATATCGTGTCAGAGTTGTACACAGTTGATGTTGTGCTCCTGTACTGTAAATATGACCAGTGACAATATGAGAAGGACCAGTCATAGAAAAATGAATAAGACAAATCACAATGTTCAGTATGGAGACTGTAGAAATGTTGAAAATTGAAATATAGTTTTCTGTTATGTGAGCTAAAGAAGCAAGATTTACAATGCCATTATTGTCAGAGTTTATTGCTGATTTGATTGTAAACTAAACCATGAACAATGATTTACTACTTTCTATTGTAAGACAGTGCCAGGTAGTATTAAGTGTCGCGGTTTGGTTGGAAGGCAAGGAGAGTTGAGGTGAGGATCTAAAAACTACCGATATTTATTAAA

Function

symbol description
ngfrb Predicted to enable coreceptor activity; death receptor activity; and nerve growth factor binding activity. Acts upstream of or within posterior lateral line neuromast deposition. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Is expressed in cranial ganglion; posterior lateral line primordium; and trigeminal ganglion. Human ortholog(s) of this gene implicated in Alzheimer's disease and mental depression. Orthologous to human NGFR (nerve growth factor receptor).

NR:

description
Ngfrl protein, partial

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG:

id description
K02583 NGFR, TNFRSF16, CD271; tumor necrosis factor receptor superfamily member 16

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_00347663_00378777.mRNA True 2055 mRNA 0.46 5 346733 378777

Neighbor

gene id symbol gene type direction distance location
CI01000047_00235688_00240415 TACO1 coding downstream 105964 235516 ~ 240769 (-)
CI01000047_00209567_00227765 NA coding downstream 118968 209497 ~ 227765 (-)
CI01000047_00160239_00163260 NA coding downstream 183453 158824 ~ 163280 (-)
CI01000047_00124354_00130228 DNAJC9 coding downstream 216347 124003 ~ 130386 (-)
CI01000047_00103238_00106878 NA coding downstream 239705 102352 ~ 107028 (-)
CI01000047_00468782_00483200 MPP2B, MPP2 coding upstream 89631 468408 ~ 483200 (-)
CI01000047_00519408_00522108 PYYB coding upstream 140512 519108 ~ 522245 (-)
CI01000047_00532901_00545479 NDC80 coding upstream 152777 531554 ~ 545479 (-)
CI01000047_00546330_00551551 NA coding upstream 167179 545956 ~ 551551 (-)
CI01000047_00558772_00579870 NA coding upstream 179275 558052 ~ 580705 (-)
G200332 NA non-coding downstream 5253 341154 ~ 341480 (-)
G200329 NA non-coding downstream 8466 337927 ~ 338267 (-)
G200325 NA non-coding downstream 17115 329406 ~ 329618 (-)
G200316 NA non-coding downstream 33301 313180 ~ 313432 (-)
G200305 NA non-coding downstream 37554 307234 ~ 309179 (-)
G200372 NA non-coding upstream 80143 458920 ~ 459172 (-)
G200376 NA non-coding upstream 82653 461430 ~ 463091 (-)
G200387 NA non-coding upstream 85973 464750 ~ 465083 (-)
G200404 NA non-coding upstream 151827 530604 ~ 531055 (-)
G200440 NA non-coding upstream 391726 770503 ~ 770964 (-)
G200299 NA other downstream 78698 267530 ~ 268035 (-)
G200472 NA other upstream 455164 833941 ~ 834471 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 1327291 1706068 ~ 1744282 (-)
G202733 NA other upstream 2753536 3132313 ~ 3133652 (-)
G202944 NA other upstream 3419026 3985342 ~ 3986402 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005198 ngfrb coding NC_007123.7 CM002896.2 9949941 ~ 10038870 (-)