CI01000047_00558772_00579870


Basic Information

Item Value
gene id CI01000047_00558772_00579870
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 558052 ~ 580705 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_00558772_00579870.mRNA
ACTGGCTCTCTCACGGAATAATATTTTGAAGCTATGCAAACTGTTTTATGTTTTTAAATGTATATTTGTTTAGCTTTTATAAATTTAAACACCTAACATTTCTCTGAATGAAATGAACTTACAACAACATGAATGTATTTTTGTTAAAGCCCACTAGAGGGCTAAATATGCGGTTTTGTCGTTGTCCTGAGCTATGCGGGGTTGGAGGAATCAACACAAGGGAACATTTGCTCGCAGGCCAAGGCACGTAGTACACATTTCTGCAGAGGCACAGCAAACCTGTCACTGTCCAGTGTGCTCGAGACACAACCGCAGCTGAAGCTTCCGTCCAAACGCGCAATTCACTGTTGAGTTAGCTTCCCTTTCTGAAAGTGTGTGAAGACTTATTCGCGATAATATCTGTTTCCTGATTTCGTTATGTCTTCAATCTAGAGGTTTTATTCATTCTAACGTAAGGTATGTGACATGCACTTTTTCTTATTCTTGTGCTCTGTAGTGGTACTACCTTAGTGCTGTTATGTTTTGTTGCTATTACTTAGTTATTATGCAACAAATTCATTTTTTATAGCTTTAAATTACGTGGTAAGTTGAAGGTTTTAAAGTGCTTCTGCCATTGCAACGACAATTTGACGGGTCATTGGAATGCGTGAGCAGGAACAGGTTTATCTCAGACTAAGATTAGCCAATACCTTCATCTATCAACTTGTTCTTGATCATTCGTTTCTCAGCTCATTTAAAAAAGTGTTTGCACTGTGTCTTTAAATGCATCTGGTAATGTAGTATTTAACACTAACGTGCTTGTTTGTAGTTTTGGTGCACAACACAGTGGGACATCATGGCTGAGGAGGAGCTCATGTTTAGCATGGAGGAGGCTACGTGGAAACATGCTATTCAGAAAGCCAAAGCCATGCCAGATCCTTGGGCTGAGTTCCATCTGGAGGAAATCGAGACAGAGCGCTGTACTCGATACAGATACAATGCGGTTACTGGTGAATGGGCAAAAGATGACATATTTATCAAGATCTCCTCTCAGCCATTTGGAAAAGGAGCCATGAGAGAATGCTTCAGATCGAAGAAGTTATCAAACTTTTCCCACAGCAACAACTGGAAATCAGCCTCAAACTACGTGGCTAAGCGCTACATGGAGACTGTGGACAGAGAAGTTTACTTTGAGGATGTGAGGTTACAAATGGAGGCTAAATTATGGGGTGAGGAGTTCAATCGCCACAGGCCTCCCAAACAGGTTGACATCATGCAGATGTGTGTTGTTGAAATGACTAGTCGCCCTGGGAGCCCTTTGTTTCACCTGGAACACTACATTGAGGGGAAGTATACAAAGTACAACTCCAACTCTGGTTTTGTGAGGGACGATAACATACGGCTTACACCCCAGGCATTTAGTCATTTCACATTTGAGCGCTCTGGACACCAGCTGATAGTGGTGGACATTCAAGGTGTTGGGGACCTTTATACAGACCCTCAGATCCACACTGAGAAGGGGACTGACTTTGGAGATGGCAACCTGGGTGTGCGTGGCATGGCTCTTTTCTTCCACTCTCACCTGTGTAATAAGATCTGCAGGAGTATGAGCCTCACTCGCTTTGACCTGTCCCCTTCTGAATATGCACAGCTGGACTGCACCAACAAATTGCTGAATTCAGCTCAGACTGTCCTCCGTGGATGTGAAGAGCAGTGTGGTTCCCCCAGGGTGCGGACAACCTCTCTCGGCCACATGCCTGTTCTCCTGTCCCGGCTCTCTGAGACTTCCTCAGTTGATGAAAACAGCGAAACAGACTCGATTCCCTGTTCTCCACTTAGTATGGGTGTCTCTGCAGGCCGATCACCCATGGGCTGGTCATTTATGAATGAAATGAATGAGACACATCGAGCCAACACAGATCAAAAGGACTCAGAGAATGGAGGAGACAGTGGTTACCCTAGTGAGAAACGCAGTGAAGGAGACTTAGTGGAACATCACAGCCAGCTGACAGAAGAAAAATGGAGTTTTTACCATTCATCTCGCTCCCACATACACAGACCATCTTGTGTGGCAATGGAGGTGGAGAGACTTAATGCTATGCTTATTGAAAGGAAAATTGGCAAATCCATCCTTGGCAAGGCATCTGAGGAAAACAGCAAGAAGGGCTTCCACTTCCTGCTGCAGGCCGCTGAGGCAGGAGACCGGCAGAGTATGATTCTAGTGGCACGAGCATTCGACACGGGTCTGAAGCTCCCTTCTGATAGGGCTATGGACTGGACACGCGCCGTGCACTGGTACGACTCTGCCCTTAAGATGATGGACTATGACGAGGGCGGAGAGTTTGATGGGATGCAGGATGAGCCACGCTACCTTCTGTTGGCACGATTGGCTGAGATGTACCAGGAGGGAGGGTTCAACCTAGATGCAGACCCCCAAAGAGCAGGTGATCTTTTCACCGAGGCAGCTGATGCAGCTATGGAGGCAATGAAGGGCAGACTGGCCAATCAGTACTACATGAAAGCAGAGGAAGCATGGGCTATGATGGAAGAATGAAAGTGCTGATTTGCAAAAAAAAAACAAAAAAACATGAAAATGCTTCATATTTTGCACCCAGCTCCTGTTTACATGCTGTTTTCAGTGGTCTATTTGACTTGATAATGTTGATCTTGGATCTGTTTTCTAATGAATGTGACGAGGGCATACGCTGATTCTAGATCAGTGATATACTGAGGTGCTAAATACGCATACTCTCTTGGTTAATTTTTCATTAAGAATAGTTGGACAGTGTCTGCAGCCTGTTCTGCCTGCTTCGTGGGAATTTGGGATATGTGCATTACCTGCCAGTGATTTTGTTCTTTTTTCTAAAAGGCCAACTGGATGTTTTCTTTATAAACCTATTGTGACTGTTAAAAAAGGGCATCACTGATGATTTGACATACTTCTGTAAAATTCATTTACTAGTATTGTTAAATCTGACGTGGAAGGATTTTAAGCATTAAAAGTTATTGCTGAGTTTTAACCTCAGCAATAACTTTTAATTACTGATACTGTCAAAAACAACTTTCAGAATTCACCATAATGAAGGAGTGTACCAGTGTGTGTAATCCTTTTTGCTGTTTTTTAATGGGTACTAGATTAAATAATAAAAATAATTTTTAAAAAGTACGTCTCATTTCACATATGCCTGTTTAACTAGCCAGAAATATGATCTGTTGTCTTTTAAATTCATACCAAGATGTCACTGCAGATAAATTAATGGTAGGATATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_00558772_00579870.mRNA True 3253 mRNA 0.43 15 558052 580705

Neighbor

gene id symbol gene type direction distance location
CI01000047_00546330_00551551 NA coding downstream 6501 545956 ~ 551551 (-)
CI01000047_00532901_00545479 NDC80 coding downstream 12573 531554 ~ 545479 (-)
CI01000047_00519408_00522108 PYYB coding downstream 35807 519108 ~ 522245 (-)
CI01000047_00468782_00483200 MPP2B, MPP2 coding downstream 74852 468408 ~ 483200 (-)
CI01000047_00347663_00378777 NGFRB coding downstream 179275 346733 ~ 378777 (-)
CI01000047_00590846_00598816 UQCRC2B coding upstream 9940 590645 ~ 598816 (-)
CI01000047_00611745_00618340 RAC2, RAC3, RAC3A, RAC1, RAC1A, RAC1B, RAC3.S, RAC3B, RAC1.L coding upstream 30037 610742 ~ 618340 (-)
CI01000047_00620874_00645283 NA coding upstream 40051 620756 ~ 645283 (-)
CI01000047_00654212_00689092 MYOF coding upstream 72743 653448 ~ 689092 (-)
CI01000047_00701972_00715090 GCP2, TUBGCP2 coding upstream 121267 701972 ~ 715090 (-)
G200404 NA non-coding downstream 26997 530604 ~ 531055 (-)
G200387 NA non-coding downstream 92969 464750 ~ 465083 (-)
G200376 NA non-coding downstream 94961 461430 ~ 463091 (-)
G200372 NA non-coding downstream 98880 458920 ~ 459172 (-)
G200332 NA non-coding downstream 216572 341154 ~ 341480 (-)
G200440 NA non-coding upstream 189798 770503 ~ 770964 (-)
G200457 NA non-coding upstream 198743 779448 ~ 801732 (-)
G200459 NA non-coding upstream 199765 780470 ~ 782343 (-)
G200462 NA non-coding upstream 206669 787374 ~ 787712 (-)
G200468 NA non-coding upstream 234622 815327 ~ 816315 (-)
G200299 NA other downstream 290017 267530 ~ 268035 (-)
G200472 NA other upstream 253236 833941 ~ 834471 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 1125363 1706068 ~ 1744282 (-)
G202733 NA other upstream 2551608 3132313 ~ 3133652 (-)
G202944 NA other upstream 3217098 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 3632704 4213409 ~ 4214085 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location