CI01000047_00590846_00598816 (UQCRC2B)


Basic Information

Item Value
gene id CI01000047_00590846_00598816
gene name UQCRC2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 590645 ~ 598816 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_00590846_00598816.mRNA
AGACGCTTCTATGCGGCCACTCAAAGGGACCAGCCCTTGACTGTGCCTCTGTCGGGGGTCAAGGTCTCGGCAGGTGCCCCTCACATGTACCAGGATGTTCATGTGACCAAACTGCCCAGTGGGCTAGTGATTGCTTCCTTGGAAAACTATTCTCCTGCTTCTCGGATTGGTGTGCTTGTCAGGGCTGGAAGCCGATATGAGGCGATTGACAACCTTGGTGTCACACACATGCTTCGTCTGGCTGCCAGTCTGACAACCAAGGGAGCGTCTGCCTTCAGGATCTGCCGCGGTGTTGAGGCTGTAGGGGGAAGCTTAAGTGACACTGTAATGGAGTATCTGATCAATGTGACCACTGCACCGGAGTTTCGTCAATGGGAAGTGTCAGACCTCACTGCCAGGGTGAAAGTGGATAAGGAACTTGCCAAGCAGACTCAACAGATTGGTGTCATTGAGAATTTGCATGCTGCAGCTTATAAGAATGCCCTGTCCAATTCCTTGTACTGTCCAGACTACATGATTGGCCAAATCACCACAGAACAGATGCACAGCTTTGTTCAGAACAACTTCACAAGTGCAAGAATGGCCCTTGTTGGTCTTGGAGTGGATCATGCCATACTTAAGCAGGTTGGTGAGCAGTTCTTGAACATCCGCAGTGGAACAGGCACTGTTGGATCCAAAGCCGTGTACCGTGGAGGTGAGCTGAGGCATCAGACCGGAGGAGGACTGGTTCATGCGGTGGTGACGAGCGAAGGTGCAAGTGCAACATCAGCTGATGCCACCGCATTCAGCATACTGCAGCATGTGCTTGGAGCAGGACCACGTGTTAAGAGAGGCTCCAACACTACAAGCAAACTAAGTCAGGCCATCTCAAAGGTCACAGCTCAGCCCTTTGATGCCTCTGCCTTCAATGCCAACTACACTGACTCTGGTCTGTTTGGAGTGTACACCATCTGCCAGGCTAACGCTGCCAAAGACGTAATCAAAGCAGCAGTTGGTCAAGTGAATGACATTGCTCAAGGAAACCTTGCAGCAGCTGACCTCAGCAGAGCTAAAAATCAGTTGACCGCTGAGTACCTGATGTCTATTGAGAGTTCCGAGGGCTTAATGGAAGCTATTGGATCACAAGCGCTGGCGGAGGGTACCTACCATTCCCCTGAGGCTGTGACCCAGAAAATTGATGCTGTGTCTTCGGCTGATGTTGTCAACGTGGCAAAGAAGTTCATGTCTGGCAAAAAGACTATGGCCTCCAGTGGACAGTTGGGCAACACACCTTTTGTTGATGAAATCTGATGGGCAATCAGTACTCTCACACATTTTATCTTTCAACAGTGTCTAACTCTTCATTTCACAAAAATGAAATGAGATCATGTTCATGATATCTTTATTGTTCCTGTAAAAAAAAAAAAAAGGGTTATCAACAGTTGGTCTTGATACTTGTAGAGAAGAACTCAGCACTTGTCCATTTGAAATGTATAGATATAAATTAATAAA

Function

symbol description
uqcrc2b Predicted to enable metal ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be active in mitochondrion. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 5. Orthologous to human UQCRC2 (ubiquinol-cytochrome c reductase core protein 2).

GO:

id name namespace
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K00415 QCR2, UQCRC2; ubiquinol-cytochrome c reductase core subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_00590846_00598816.mRNA True 1491 mRNA 0.48 12 590645 598816

Neighbor

gene id symbol gene type direction distance location
CI01000047_00558772_00579870 NA coding downstream 9940 558052 ~ 580705 (-)
CI01000047_00546330_00551551 NA coding downstream 39094 545956 ~ 551551 (-)
CI01000047_00532901_00545479 NDC80 coding downstream 45166 531554 ~ 545479 (-)
CI01000047_00519408_00522108 PYYB coding downstream 68400 519108 ~ 522245 (-)
CI01000047_00468782_00483200 MPP2B, MPP2 coding downstream 107445 468408 ~ 483200 (-)
CI01000047_00611745_00618340 RAC2, RAC3, RAC3A, RAC1, RAC1A, RAC1B, RAC3.S, RAC3B, RAC1.L coding upstream 11926 610742 ~ 618340 (-)
CI01000047_00620874_00645283 NA coding upstream 21940 620756 ~ 645283 (-)
CI01000047_00654212_00689092 MYOF coding upstream 54632 653448 ~ 689092 (-)
CI01000047_00701972_00715090 GCP2, TUBGCP2 coding upstream 103156 701972 ~ 715090 (-)
CI01000047_00884469_00889027 NA coding upstream 284882 883698 ~ 889027 (-)
G200404 NA non-coding downstream 59590 530604 ~ 531055 (-)
G200387 NA non-coding downstream 125562 464750 ~ 465083 (-)
G200376 NA non-coding downstream 127554 461430 ~ 463091 (-)
G200372 NA non-coding downstream 131473 458920 ~ 459172 (-)
G200332 NA non-coding downstream 249165 341154 ~ 341480 (-)
G200440 NA non-coding upstream 171687 770503 ~ 770964 (-)
G200457 NA non-coding upstream 180632 779448 ~ 801732 (-)
G200459 NA non-coding upstream 181654 780470 ~ 782343 (-)
G200462 NA non-coding upstream 188558 787374 ~ 787712 (-)
G200468 NA non-coding upstream 216511 815327 ~ 816315 (-)
G200299 NA other downstream 322610 267530 ~ 268035 (-)
G200472 NA other upstream 235125 833941 ~ 834471 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 1107252 1706068 ~ 1744282 (-)
G202733 NA other upstream 2533497 3132313 ~ 3133652 (-)
G202944 NA other upstream 3198987 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 3614593 4213409 ~ 4214085 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location