CI01000047_00884469_00889027


Basic Information

Item Value
gene id CI01000047_00884469_00889027
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 883698 ~ 889027 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_00884469_00889027.mRNA
CCTGTCTTTTGGTTGTATCATTCGGGTGATGGAGTGTGCAGTGAATCTGCTCCGGCTGGATTGCCGTTATGCGTCCTGGCACAGGCTGGCTCTGCCTAGCTCCCAGCGCTACCCGGGGAGCCCAGAGTATTATCGTGATGATGATGATGACGACAGAAGTGATGACGAGGGGAAGGCTGTGTACTCTGAGGATGAAGCCGTGTCTCATCATGGGCTGAGACGATCTCAGAGCGTTAAAATCACCCGCTCAAAAGTGCGCAGAGATGCACGTTATGGATCTCTGAAGATCAAAGGGAGGAAAAGACCAGGGCTGAATGCCATGACTTACTCCAGCATGGAGAACTGAGCTGACTACTGATGTGTGGGAAGATGTGTCCACTTTATCATACTACCAGCGTGTTCATATTCTTCTTTTCATAAGGGCTGTGGACTATGATTTTCAACTCTTTCATGGATATATCAGCAGATCTATTTATTACTTCTACCAGCAAGTGTGTACATACAGTGAGCATCATGAGCTTGAAGTGTGTGGGGTTTGACTGACTGATGGCTGTATTTGTAATGCATGGCTTTATTGATCTGAATTTGACATTCAGATGTCTTTGGCTTCAGTATTTGTATTTAGAAATGTGTTCTTTTTGGATGTGGGTTTTTATATTTCTGTTTCCGTACATATTTTGCTGCCTTTTAGATAATGTTTTAAGTAGTTTTTACAAATTGTAGTTTAGGTAATAATCCTGATTCTTCAAAACTTGACAATGATTTGTCAGCACCAGACCAAAATTCTCTAAATCAGTAATGAAGTAAATACCAAAGAGAACAAAAGGCAGTGTTGTGTTCATGTTGACTTTTCAGATGTTTTAATACAATTTTCAAATGTTAAAAAAAAAAAAAAAAAAAAAGGTCGGTCAGTTGATGGGACCTGGGTTTAAAGGAAACCCCTTTTGCACATTCTTTAAATCCTCGATGGAAATCCATCACTACTGGTATCCATGCAGAATGTTCTTTATCTGGGAGAAACACCACACTAATATAACATCTCTGGCAGTGCGCAGGTAATTCTGTTCTGTCGTGTGGCTGGATGTGTCATTCAAAATGAATGCAAAATATGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_00884469_00889027.mRNA True 1117 mRNA 0.41 3 883698 889027

Neighbor

gene id symbol gene type direction distance location
CI01000047_00701972_00715090 GCP2, TUBGCP2 coding downstream 168608 701972 ~ 715090 (-)
CI01000047_00654212_00689092 MYOF coding downstream 194606 653448 ~ 689092 (-)
CI01000047_00620874_00645283 NA coding downstream 238415 620756 ~ 645283 (-)
CI01000047_00611745_00618340 RAC2, RAC3, RAC3A, RAC1, RAC1A, RAC1B, RAC3.S, RAC3B, RAC1.L coding downstream 265358 610742 ~ 618340 (-)
CI01000047_00590846_00598816 UQCRC2B coding downstream 284882 590645 ~ 598816 (-)
CI01000047_00892063_00896561 NA coding upstream 1606 890633 ~ 896561 (-)
CI01000047_01071329_01073839 NRBF2B, NRBF2 coding upstream 181275 1070302 ~ 1073839 (-)
CI01000047_01119401_01120162 ADOA coding upstream 230125 1119152 ~ 1120233 (-)
CI01000047_01175229_01292056 ARID5B coding upstream 285561 1174588 ~ 1292056 (-)
CI01000047_01337067_01353593 NA coding upstream 447942 1336969 ~ 1353593 (-)
G200479 NA non-coding downstream 35631 847843 ~ 848067 (-)
G200471 NA non-coding downstream 49831 833510 ~ 833867 (-)
G200470 NA non-coding downstream 50241 833186 ~ 833457 (-)
G200469 NA non-coding downstream 66620 816609 ~ 817078 (-)
G200468 NA non-coding downstream 67383 815327 ~ 816315 (-)
G200607 NA non-coding upstream 202857 1091884 ~ 1092263 (-)
G200609 NA non-coding upstream 208634 1097661 ~ 1097894 (-)
G200626 NA non-coding upstream 245118 1134145 ~ 1142557 (-)
G200652 NA non-coding upstream 434470 1323497 ~ 1323757 (-)
G200657 NA non-coding upstream 438367 1327394 ~ 1327615 (-)
G200472 NA other downstream 49227 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 361456 519108 ~ 522245 (-)
G200299 NA other downstream 615663 267530 ~ 268035 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 817041 1706068 ~ 1744282 (-)
G202733 NA other upstream 2243286 3132313 ~ 3133652 (-)
G202944 NA other upstream 2908776 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 3324382 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 3389881 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004535 reep3b coding NC_007123.7 CM002896.2 8822717 ~ 8882186 (+)