CI01000047_01175229_01292056 (ARID5B)


Basic Information

Item Value
gene id CI01000047_01175229_01292056
gene name ARID5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1174588 ~ 1292056 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_01175229_01292056.mRNA
GATGAAGTTATCGCCGTCTCAGAGAAAGTCATTGTAAAGTTGGAGGATCTGGTGAAATGGACAGTGGCGGATTTGTCGAGTTGGAAGAAGGGTCTGCGGGCCATACCCCTGAAACCCACCGTGCTGAAGGAGCTCGGCAAGAACGGCCAGAGAGAAGCGCTCCACAAATACAGAGAGTCCACACTCAACAGCGGCCTCAACTTCAAGGACGTCCTCAAAGAGAAGGCTGAACTTGGTGATGATGCAGATGAAAAGAAGGTTCTGGTACTGAGTTACCCCCAGTACTGTCGGTACCGCTCCGTCATCGCGCGGCTTCGGGAGAGGCCAACCTCCCTCTTGACGGACCATGTGGTGCTGGCCCTGGGAGGAATCGCCTCCCTCACCAACAACACCCAGATCCTGTACTGCAGGGATACTTTTGAGCACCCCACACTGGTGGAGAACGAGAGTGTGTGTGATGAATTTGATCTCAGCAGTGCTATCAATGCGGCCTGGCATGGCACTAGGAGAAACCTTAAACAGGCCGACAGAAACGCTAGTGCTCTTAATAAAACATTTGAAGTATTTTATAAGGATTGTGGAGTAGTGTTGGGGGATTTATGGGGGGCACCCAACCTGAAGGGCCGGCCCCGGAAGAAGAAGCTCTCCATCTCCCAGCGGCGAGACTCACAGGGGCAAGGCGGTACTGCCAAGGAGCCCAACGGTGTGGAGGGCAAGTCTCTTGTCAAGATGAAGGTGGACTCAAAATCAGGAGTTCCCAAGCCCAGAAACAACAATAGTGGCAGCAGTTGGAAAAAAGTGACGCCTGAAGACAAACCGAAGGTTGAAGGAGGTGAGGAGTGCCGCACAGATGAGCAGGCCTTCCTGGTGGAACTGTACAAGTACATGAAAGAGAGGAAAACTCCCATTGAGAGGATACCATACCTGGGCTTCAAACAGATAAACCTTTGGACTATGTTTCAAGCGGCTCAGAAACTGGGAGGATATGAGGTGATCACAGCACGACGACAATGGAAAAATGTATACGATGAACTGGGCGGCAACCCGGGAAGCACTAGCGCCGCCACGTGCACACGAAGACACTACGAGAGCTCGTACAGATGTGATTATGAACGTGCTGGTTTGAGACTCATCCTACCCTATGAGAGATTTACAAAAGGAGAGGAGGACAAACCCCTTCCGCCCGTCAAACCCCGCAAACAGGAGGGCAGTGCCCAGGAGGGCATTGTCAAAACAAAGATGATGTCCATCAAGCGCCCTAAGGATGAACAAAAACCGGTGCCTCGGAGCGAAAAGGACGTCTCAGCTAAAGTCCCAGAGCTGGGGATGGAGGACACGGAACAGCTCCAGGAGAAGCAGGATAGCCAACAGTCCCTGGTTCTAACCTCGAAGGACCTAGAAGCAAAGAGTCCTCTTATTGAAGATGAAGGTGTGCAGCTAGTGATCAAGGATGAAGATCAACCTGTGGTCCATAACGCATATGAGCATGCAAATGGGAATGTCTTGCCCTCACTTCCACAAGATGGTGCGCCACTCAAATCAGAGGATTGTGACGTGTTTCCTGTTGCTGCCATGCTGCTGCACCACGGTCATCCTCTCCCCAACTCTCACACACCGGACCAATGGCAGCATGGGGTGCTAGAATACAAGGTACCTCCAGGTGCCCTTGCAAACATTGAACAGTCTAGGCCAAAAGAGGGCCAAAACCAGGTGGGAATGGTGCTGCCGACCATAAAGCAGAAACCTGTCGCATCTCCTGAAATCCCACCCGAAAGGGCCGAGCCCACTAAAAAGGAAGAAGCATGCTTCAATTTTAATCCTCTCCTCTACCCTAGGGGTAATCCTGGCATCATGTCCCCATTAGCTAAGAAGAAGATGCTGTCCCAAGTCAGTGGAACAGGACTGCTTAATAATTACCCATATGGACCGCCACCTCCATTGGTCAGTAGGAGGTTGTCCAGCAGTAGTACAGAAAGCTCATCTGCTGGACAGCAGAGCTCCCATGCTCCTTCCACTGCGGAGACCAACATGGTGATCAAACGACCATCAGTTATTCAGCATGCTCAGAGCTTCAAGTCCAGGGGCAGTGAGGACAGGAAGTCCTCAACAGAGGGCTCTCAGAAAGAAGGGTGTAGTGAGGGAGAACCAGTACCCCAGCCACAGCCTACTCCGATAAGAGAGCCGTACATTATGAGGGCCGACCCCCATTCCAGCATGGAGAAATCTGCTGAGATGCCTCGTCCTGGCCAGGCTCCCAGCTTCCTGAGTGACTTTTACTCCTCACCACACCTACACAATCTCTGCCGACAAACAGAGCACCACCTGAGCAAGGAGCAGATAAGCAAGTATCTTAGCAGAGACGTTTACCCTCGAGACTGTGAGACCGCCCAGGGCTTTCCCCCAAGTCAGCATCCCGACAATGTGGGTTTGAATTACTGTGCCCGGCTTAGTCAGAAAGAAAAGGGACCTCCTGCAGAAAGGGTAACAGAGGAGCAACCAACTGATTTGAGCCTCCCAAAATCCTCTCCCCACAAACTGCCTCTTTCCACATCCTCTCTCACTGGCATCCCACATCCCGCAATGCAACAGGACATTAAAAACTCTCCTCTCTTTCAAGCAGGCAACAGTCAGAGCTCAAGCATAGATTACCATCCCAGAGCCTGTCGTGTTACTCCCATGACCGTGTCCACGTCTAAAAAGGTAACTGAACCGAAATCACACAACGGCAGAGGAGAAGAGACCTTGAGCTACAAGATTGATGAGATGGCTCGGCCCATTCTGAGTGCAAAAAGCAGCCCACAGAATATTTGCGCTGCACGGCCACTGAAAAGGAACCTTGAGGATTTGGAGAACGGCCCATCGGAGAAGAAGATCCGGGCTGTGACGCCCTTGCACTGCTCGACGCAAAGAGACGGCCCGGGGAAACCAAGGACGCCGGAAGCTGACAGTGAGTCCATGAAGCCAGCAGAACCTGCTCACGCAGTGCACATCAACGGTTACGTTTCAGATGGCCACAAGATCCCCTTGCACTCCCACCTATTCCAAGGGCTGTATCCAGGGACATTTGTATCTCAGGTACAGGACATGTGTGAAAGCTTGGGCTCCCATGTCACCCCAAGTTTCTCCCATCCACTGCAGTACTTGAAGAACCAAGCTGTTTTGTCACCACTCATGCCCCCCTTCGCCATTCATTCCTTAATGATGCAAAGACAGTTCCTGGCCGCCAATCCCGCCCACATGTACAGGCACCAAGTGGGCACCTCATACGGGGACATTCTGCACCCTGGCCTCTACCCCATGTCGGCCCTTCACCCCCAGCCAGCTTTCAGTCCCCCTCAACTCTCTTCAGTGCACCCCAGCACTAAACTTTCCTAGGTGATGCAGTCTGATATTCCCTGGCTGGATGTGCCCAGCCCAGACTTGATGCTCCCCAGAAAATCCCATCAAGCATGGTCACACTATGTATCCAACCAATAGCTGTGTTTTATAAATGCTTTAACACGGGAGCAGTTATTTCTGTTAATTACTTTCTTGCCACTCAAGTTTATGATTTGCACATTTCTTTGAACAGGGGCCAACTGGGCTGATTGTGGCTTGTTCTCAACGCACTGTTTGAAAGTGTCAGTTGTCTTGTTCGAAAACATGTTGCCTTGGCACAGGTGCCCAAGTGGAGATGGGTATGATGTCCACGGAGGAAAGTCGAGTGACAAATCAGTGCAATGCAACAGTGCTATTTCAGTCCATTCTGAGAGCTCTTTTGTCTGAAACACTATGATACGATAATGCAAGAGCTGCCTGGGTAACTGTTGGACCTTTTCACATTATTCTTGACTGTACGTTTTTTTGTTGCTGTTGTTGTTGTTGTTATTTTTTAAAAATGCAACAGTGTGGTAGTTTTATATGTTTATTTTTCAATCCTACAAGGGTTAAGCAATGAGATATCACATTTGATAAAGACGCAGAAAAAAGACCCGAGTATTGCAGTTAGGTGTGTTACACGGTTACATGTAAATAAA

Function

symbol description
arid5b Predicted to enable transcription cis-regulatory region binding activity and transcription coactivator activity. Predicted to be involved in adipose tissue development; positive regulation of DNA-binding transcription factor activity; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ARID5B (AT-rich interaction domain 5B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_01175229_01292056.mRNA True 4016 mRNA 0.50 10 1174588 1292056

Neighbor

gene id symbol gene type direction distance location
CI01000047_01119401_01120162 ADOA coding downstream 54355 1119152 ~ 1120233 (-)
CI01000047_01071329_01073839 NRBF2B, NRBF2 coding downstream 100749 1070302 ~ 1073839 (-)
CI01000047_00892063_00896561 NA coding downstream 278027 890633 ~ 896561 (-)
CI01000047_00884469_00889027 NA coding downstream 285561 883698 ~ 889027 (-)
CI01000047_00701972_00715090 GCP2, TUBGCP2 coding downstream 459498 701972 ~ 715090 (-)
CI01000047_01337067_01353593 NA coding upstream 44913 1336969 ~ 1353593 (-)
CI01000047_01373782_01374697 NA coding upstream 81726 1373782 ~ 1374854 (-)
CI01000047_01375108_01392690 RHOBTB1.S, RHOBTB2, RHOBTB1 coding upstream 82857 1374913 ~ 1392690 (-)
CI01000047_01404421_01451987 NA coding upstream 112315 1404371 ~ 1452053 (-)
CI01000047_01470439_01470729 NA coding upstream 178343 1470399 ~ 1470794 (-)
G200626 NA non-coding downstream 32031 1134145 ~ 1142557 (-)
G200609 NA non-coding downstream 76694 1097661 ~ 1097894 (-)
G200607 NA non-coding downstream 82325 1091884 ~ 1092263 (-)
G200479 NA non-coding downstream 326521 847843 ~ 848067 (-)
G200471 NA non-coding downstream 340721 833510 ~ 833867 (-)
G200652 NA non-coding upstream 31441 1323497 ~ 1323757 (-)
G200657 NA non-coding upstream 35338 1327394 ~ 1327615 (-)
G200678 NA non-coding upstream 67334 1359390 ~ 1359612 (-)
G200681 NA non-coding upstream 74684 1366740 ~ 1367087 (-)
G200682 NA non-coding upstream 75068 1367124 ~ 1367339 (-)
G200472 NA other downstream 340117 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 652346 519108 ~ 522245 (-)
G200299 NA other downstream 906553 267530 ~ 268035 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 414012 1706068 ~ 1744282 (-)
G202733 NA other upstream 1840257 3132313 ~ 3133652 (-)
G202944 NA other upstream 2505747 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 2921353 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 2986852 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004529 arid5b coding NC_007123.7 CM002896.2 8168272 ~ 8385702 (+)
bowfin (Amia calva) AMCG00002879 arid5b,LOC106577140,LOC102237181,LOC102783177 coding CM030139.1 CM030139.1 5304911 ~ 5315169 (-)