CI01000047_01654684_01688086 (PHYHIPL, PHYHIPLB)


Basic Information

Item Value
gene id CI01000047_01654684_01688086
gene name PHYHIPL, PHYHIPLB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1654138 ~ 1688308 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_01654684_01688086.mRNA
AGTAGAACACGTCACTGGAGAGAGGCTGCTCTTTGCCCTTGACTGTGGTGTCGCAGGAGAGATCAGCTCTGATGGAGCGGCCGTGACGATGTGCTGACGTAGCCCTCATCAGCAGCACACTGTGGAAACCCGTGGGAGACAGAGAGAGCGCGGAGTGAAGATCTGTCCTGCGGCACTGCAGTCACTCTCACTGCCGGAATATCGTTCGTTAGAAGCTCAATGATGGAGGTTCCACGCGTGGGACACAGTGTCAGCAGCCCCACGAGCCCGTGTGAGGACATGATAAAGAATCTCAGTCTGGACGCCATCCAGCTTTGTGAGAGAGAAGGAAATAAGTCCCTGGACAGTGGCATTGCCGAGATGGAGGAACTTCCTGTTCCCCAGAACATCAAAATCAGCAACATCACATGTGACTCCTTTAAGATCTGCTGGGACATGGACTCCAGGTCAAAGGAACGCATCACACACTACTTCATCGACCTCAACAAGAAAGAAAACAAGAATGCTAACAAGTTCAAACACAAGGACGTCCCTACTAAACTGGTAGCGAAAGCAGTTCCTCTGCCCATGACAGTCCGAGGACATTGGTTCCTGAGTCCACGCACAGAGTACACTGTGGCCGTTCAGACCGCGTCCAAACAGGGTGATGGGGACTATGCCGTGTCGGAGTGGAGTGAGATCATTGAATTCTGTACAGCTGATTATTCCACTGTTCATCTCACGCAGTTGCTGGAGAAAGCTGAGGTCATCGCCGGCAGAATGCTGCGGTTCTCAGTCTTTTATCGAAACCAGCACAAGGAATACTTTGACCATGCAAGGGAGGCCCAAAACAACAAGATGTTGCCATCAGTGAAGGATAACAGCGGCAGCCACGGCTCACCCATCAGTGGGAAGCTAGAGGGCATCTTCTTCAGCTGTAATACAGAGTTCAACACGGGCAAACCCCCTCAAGACTCACCATACGGCCGTTACCGCTTCCAGCTGCCAGCCGAGGAGCTCTTCAGTCCCAAGACAAACCTGTATTTTGGTGACTTCTACTGCATGTACACAGCCTATCACTACGTCATTTTGGTGATTGCGCCGAAAGGCTCACCTGGAGACGAGTTCTGCAAGCAGCGCCTACCAGCATTGGATATCGGCAACAACCGTTTTATGACGTGCTCGGAGGATGAAGATGGTCAGCTGGTGTTCCACCACGCACAGGACCTTATCCTGGAGGTCATCTACACCGATCCCGTGGATCTGAGCCAGGGCACGGTAGCTGAGATCAGCGGCCACCAGCTCATGAGTCTCTCCACAGTCAACGCCAAGAAGGATCCCAGCTGCAAGACCTGCAACATCAGTGTGGGACGCTAACCTATGAAACTGAACCCTTCTGCTGCCTTGAACAGCACAGAAAAATCGCCTTCTCCTTTAGCCGTCCTCCTTACCCATTAACTTATCCATAATTCCTTCTGGTGTCTGTAAGGATCCTTCGCAGCATGTGTCTCACAGCTTTTGACAAAATGCTCTTTTTCTTTTACTAGCTTATTGGTCTCGACCCGGGGTCAGGCTAGATATGTCGTGCTCCTATTTTTGTGTTGGGATGTTGACTTAATAACACCTGTCAATCAAACTGCTTCTTTAACCCCATTGGCTGTCAGACCCTCCCATTAGAAAGCGGCATTGTAACAGTTTACCAAAGTCTACACAAATTTAACACAAATTTCTCATCAAGTCACAGCAGTCAGTCAATCGAGACAACCGTCCTTATGAGGCATTATGAATGTGATGATCAAGTGAGATCTCAAAAACCATGATTGGACGCATCTGTAGCATGATTGCAAACATTTTTGACTTAAGCAGTGTTTCATGTTATCTATTCCAACCCATTCAGTATACTGTGATTTAACATATAATAAA

Function

symbol description
phyhiplb Predicted to be active in cytoplasm. Is expressed in dorsolateral placode; intermediate cell mass of mesoderm; nervous system; and ventral mesoderm. Orthologous to human PHYHIPL (phytanoyl-CoA 2-hydroxylase interacting protein like).
phyhipl Located in cytoplasm.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_01654684_01688086.mRNA True 1902 mRNA 0.49 5 1654138 1688308

Neighbor

gene id symbol gene type direction distance location
CI01000047_01470439_01470729 NA coding downstream 183344 1470399 ~ 1470794 (-)
CI01000047_01404421_01451987 NA coding downstream 202085 1404371 ~ 1452053 (-)
CI01000047_01375108_01392690 RHOBTB1.S, RHOBTB2, RHOBTB1 coding downstream 261448 1374913 ~ 1392690 (-)
CI01000047_01373782_01374697 NA coding downstream 279284 1373782 ~ 1374854 (-)
CI01000047_01337067_01353593 NA coding downstream 300545 1336969 ~ 1353593 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 coding upstream 20212 1706068 ~ 1744282 (-)
CI01000047_01813106_01813800 NA coding upstream 124549 1812857 ~ 1814122 (-)
CI01000047_01823330_01823581 NA coding upstream 134964 1823272 ~ 1823581 (-)
CI01000047_01824882_01828103 TFAM coding upstream 136574 1824882 ~ 1828952 (-)
CI01000047_02317565_02318902 DKK1B coding upstream 628891 2317199 ~ 2318963 (-)
G200827 NA non-coding downstream 27292 1626621 ~ 1626846 (-)
G200711 NA non-coding downstream 46685 1606841 ~ 1607453 (-)
G200712 NA non-coding downstream 47486 1606285 ~ 1606652 (-)
G200720 NA non-coding downstream 100805 1552004 ~ 1553333 (-)
G200763 NA non-coding downstream 197604 1456183 ~ 1456534 (-)
G200847 NA non-coding upstream 6909 1695217 ~ 1695451 (-)
G200850 NA non-coding upstream 11666 1699974 ~ 1700241 (-)
G200869 NA non-coding upstream 172274 1860582 ~ 1860871 (-)
G200880 NA non-coding upstream 200449 1888757 ~ 1889106 (-)
G200889 NA non-coding upstream 235352 1923660 ~ 1923995 (-)
G200472 NA other downstream 819667 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 1131896 519108 ~ 522245 (-)
G200299 NA other downstream 1386103 267530 ~ 268035 (-)
G202733 NA other upstream 1444005 3132313 ~ 3133652 (-)
G202944 NA other upstream 2109495 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 2525101 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 2590600 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002940 phyhiplb,phyhipl,LOC107654056,LOC107746456,LOC107695536,LOC107727060 coding CM030139.1 CM030139.1 7166518 ~ 7189805 (+)