CI01000047_01708628_01744282 (BICC1B, BICC1)


Basic Information

Item Value
gene id CI01000047_01708628_01744282
gene name BICC1B, BICC1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1706068 ~ 1744282 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_01708628_01744282.mRNA
ATCCACACATCAAAGTTAGTGGTAAGAGGGACAATGTGAAGGAAGCCAAGGAGAAGATCATGTCTGTACTGGACACAAAGAGCAACCGCGTGACTCTAAAGATGGACGTCTCGCACACAGAGCATTCACATGTCATCGGCAAAGGGGGAAACAATATCAAGAAGGTGATGGAGGACACGGGCTGTCACATCCACTTCCCCGATTCCAACCGAAACAACCAGGCTGAGAAGAGCAACCAGGTGTCTATAGCCGGCCAGCCAGGAGGAGTGGAGGCCGCCAGAGCCCGAATTCGGGAGTTACTCCCGCTGGTGTTGATGTTCGAGCTGCCAGTCATAGTACAGCTGAACCCTGACCCCAGCTCTCCTGCCATCCAGCACATCTCCCAGACATACAACATCTCTGTGGCCTTCAAACAGAGGTCCAGACTCTATGGAGCGACAGGAGTAGTGCGGGGCTCACAGAATAATGCTGCAGCCGTGAAGGAAGGGTCTAGGGCTGGAGTTGTCCTGTGGGCTATTGGCTATGCCTGGTATGTGTTGAGAACTGGGCACCACCTCTTCATGATGGGCCGCAACGGCAGCAACATCAAGCACATCATGCAGCGCACAGGAGCCCAGGTCCACTTCCCAGACCCTAACTGCCCACAGAAGAAATCCACCGTCTACGTGCAGGGAACCATTGACTCTGTGTGTCTGGCCCGTCAGTACCTGATGGGCTGCCTGCCACTGGTGCTGATGTTTGATATCAAAGAGGATATTGAGGTGGAACCACAGTGCATTACTTCCCTAATGGAACAGCTTGATGTGTTCATTAGCGTCAAACCAAAACCCAAGCAACCTAGCAAGTCAGTTATAGTGAAGAGTGTGGAGAGGAACGCTCTGAACATGTATGAGGCCAGACGCTATCTGCTGGGTTTGGAGAGCAGCGGCGTATCAGTCCCCACCAACACCAGCTGCATCACCAGCAGTAATGGCGGCAGTCCTCCGTCCATCCCTCCCCCACCTCCAGCTCTCAGCTGCCCCGTGGGGCTCGACATCTTGGCCTCTGCCGGCCTCGGCCTCACCAGCTTGGGTCTTCTGGGACCTACAACAGCCTCCATGACAGGACATTCCACCAACTCCCTTCTCAACGCTCTCAACAGCTCCATCAGCCCATTACATACACCCACTTCTGGAACGCCCAGCCCCACTCTCTGGTCCAACTCTCTGGCCAGTCCAGCCAGCACACCAGGATTCTCATCGCCCTTGATGATTCACCCAGCCACCCAGGCCACTCTAACTAGCATCTTGCTGTCAGGAGTACCAGGCTACACACAGAACACTCCATCCCCTCCTCCTGGTCTCGCCCCCATTGACGCACAAATCAACGGGGTATCAGACTGCAGTAAAGCTGTGTCCCCCCTCAGTAGTAAACAGCCCAGCACCATGTACAGCAGAATGTCTGCAGCGTCTCTCACAGACAAAGTTCTGACCGCAGCTCATGGTGACTCAGTGCAGGAAGCCAGCCCTCACTGTCCTTCTGAACCGCTGTCCAGCAAGTCCAGCCAAGACCAAGGCTCGGATACGTTCGTGGAAGTGGGCATGCCTCGAAGCCCTTCTCACTCGGGAAACAGCAATGAACTGAAGCAGATGTTGGCATCCTGTAAGACATCGTCAGGAAAGAGGCAAGCCCTGGAGCTGCTACAGGGCACCAAGAACTCCCTCCTACATTCAGAGTGTCTGTTGTCAGACTCTGACTCCAGCGCCTCGGAGAGTCCGGTGGCTGATAAACGCGCTCCAGGCAGCGAGAGAGCAGCCGAACGGGCCGCTCAGCAGAACTCGGACAGAATCCGCCTCCCTCCCCAGTCCTCCTTCTCCAGTATGCAGGCGTTCGACTACGAGCAAAAGAAGTTATTGGCGACCAAAGAGCACTACCTAAGCAGCAGCAACTACATGGACTGCATCTCGTCAGTGACGGGAACTAACGGCTGTAATCTCAACACATCTTTCAAAGGATCTGATCTGCCTGAGCTCTTCAGTAAACTTGGCCTCGGGAAGTATACAGACGTCTTCCAACAGCAGGAGATTGACCTTCAGACATTCCTCACGCTGACCGATCAAGACCTGAAAGAGCTTGGCATCACTACATTCGGAGCCCGCAGGAAAATGCTGTTGGCCATCTCAGAGCTGAACAAGAACCGAAGGAAGCTCTTTGAGCCGCCCAACATCCGCTCCTCGTTCCTGGAAGGGGGCGCCAGCGGTCGACTGCCACGACAGTTCCACACAGACATTGCCAGTGTGAGCGGGCGCTGGTGAGCCCATGCCAATGCATCAACATAGGCCTGAACTGCACAAATTCCCATTCCCAACCTGACATAAAGTACTGGACCAAAACCCGGACCTTCTGAAACTGTGCCAAATAAA
>TU227734
GTGAACAGCGTAGGCCAATACTGAGCCAGCATTCTGACATAGAACCCAGAAGCCTGCACTGTCTATACAACATAAACAGCGTAGGAGACGACAGAAGAAATTGTTTAATGAAGTCGTTATTTTTGTTTTGTTTTTTTCGTGCAAAAGTATTCTCGTCACTTCATAACATTAAGGTTGAACCACTATAGTCACGTTGACTATTTTAACGATGTCTTTACTACTTTTCTGGAACTTGAATGTGGTAATTACGTTGCTTTCTATGGGGGATAACATAAACCTCTCGGATTTCATCAAAAAGAACTTAATTTGTGTTCCGAAGATGAACAAAGGTCTTACGGGTTTGGAACGACATGAGGGTGAGTAATTAATGACAGAAATTTAATTTTGGGTGAACTAACCCTTTAGGTGTACAGTTTGGTAACCTGGTAAACACTGGTAACTATATTTTATGTATTTTGGAATAGAGCACTACCTAAGCAGCAGCAACTACATGGACTGCATCTCGTCAGTGACGGGAACTAACGGCTGTAATCTCAACACATCTTTCAAAGGATCTGATCTGCCTGAGCTCTTCAGTAAACTTGGCCTCGGGAAGTATACAGACGTCTTCCAACAGCAGGAGATTGACCTTCAGACATTCCTCACGCTGACCGATCAAGACCTGAAAGAGCTTGGCATCACTACATTCGGAGCCCGCAGGAAAATGCTGTTGGCCATCTCAGAGCTGAACAAGAACCGAAGGAAGCTCTTTGAGCCGCCCAACATCCGCTCCTCGTTCCTGGAAGGGGGCGCCAGCGGTCGACTGCCACGACAGTTCCACACAGACATTGCCAGTGTGAGCGGGCGCTGGTGAGCCCATGCCAATGCATCAACATAGGCCTGAACTGCACAAATTCCCATTCCCAACCTGACATAAAGTACTGGACCAAAACCCGGACCTTCTGAAACTGTGCCAAATAAACAATGTCCATGGAACAGAGGTTTAGGGTCAAAGAACTGTTGAATATTATATGCAGTATGGTACATTATGCAATATGGTACTCATGTTACAATGAAGGAAATGTTGTGAAGGAACATTGGAGCTCCTGCACTGTCCTTGTATATGGTGCAGGCAGACTTTTATTTATATGCTTGTCTTAGGCTTCGCCATACTAAATCTTTGCACTTTAAAAAATGCTAAATACTTAGTCTATGGACAGATTCGCCTGACTAGATGTGCTTGGATCTTACTTAAAGCACTTAAATGGATATCAAGCCAAAGTGTTCTGCGCAAATTATCCATAAGGGGATCTTATCTCATCCCACAAGGCTGCACCACAGTGAAATCACCAGCCTGTTGTTATTACTGATGGACCTTAGTCAGAGTAGACGGCATTTGACACAAATAGTGTACGTCTATCCCTCACAGGCTTGTTTTCATTCAGGTCAAATTAAATATGACGTCTACCCTAACTAAGGTCCACTGTACATTGTCTATATATATTATTTCTGAACCTATAAGTTGTTTACTCTTAAAGGGATAGTACACAGAAAAAGGAAAATTGTGCCATAATTTCCTGTATGATTTTTGTTCTTCTATGGAACACAAAAGAAGATATTTTAAAGAATGTTTCAGCTGTTTTTGGCCATACAATGATAGTTAATAGAGTGCATTAGTTCTCGCTCATTTTTTCCACAGCGTTGGTTCCAGAAGTATTTTTCCATTCATTTTTGCCATAGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAGAACAATAATGCAAACAGATGCTTCAACAAAATCATATACCATTGGTTAACAGCCTTGGAGCTCACAATAGGTCTATCAAAAAAATTACTTCAAAATTGGAACCAAACTGTTTCACTTTATAGGGTCCAATACAACCTTCATTGTATGGACAAAATATCTTCTTTTGTGTATCTGCAGAAGAAAGAAGTCACAGAGAATTTTAATTTGGATAAGCTATCCCTTTAGCTGTTGGTTTTAGAGGTTAGAGTCGGCCTGTCAGTAGTAGCTCTCTCAATAGTGTCTCTCTTTAGCCTCTGACAGAAGTGCAAATTACACCAGCTCTGTTTCAACCACCTTCCTGAACGCCACAGACCACAAGTCTTCACTGACCGCACTTGGAATTCTTGTCAGAGCTGACCATGGCTTAATCTACGGCTTTTCTCCTGCACGCGACCAAAGTCTGTGCTGCTTTTCTTGAGCTCTAGACTTCCTACATCGTCTAAAGCGGCTTGTTTACTTCTATCTTCTCTCACCATTGTTACGTTATCCCAACGCGCTCGTTGTGTTCTCGTATTCTTCGGATATTTCCAAAGCACGTCTTTCAATTCTGACTATATCTAAAGCTGTGAATGTTGCCAGATGTACTCCAAAGGATTGATACCACCAAGTGCCTTTTGTCTTGCACTGACAACTTTTCCAAAGTAATCGAAGACTATCGATCTCTCAAAGGTACAAATGTTTTACTGGGAAGTACCACTTACAGAGTAATCTCGCAGTGCATTGCTTTATCTTTACATGTACGGTATATATTTAGTACTTCCATTTAGCTCTTAAGTACATTGAATTTGTACCTCACACGTGATAGAGGTACTATTTAAGTTTGTATTTTGCATATTGTCTTATTATGTTTGTTTATAGACTTTATGTAGTTTGCTTTGATAATTTACAGACAGTAGCAATCAACCAGTCAATCAATTTGTGTAATAGTTTATGATGGTTTTTTTTGTTGTTTTTTTTAAATTGAGACTGACAAATGAGTGAAACAATAGCTCTCTGTGTAGCCTAAAAATATTATTAGTAATAATAAAATGCAACAGACTATGCAAAGAATCACTTTGCCATTTTAGGTTTAAATGTTTCTGTTTAAGCACATACGCTTTTGTGGTTTATTGGTTGTTCCTTGTTTTTGTTTTAAAGCGAATTAATTTTATAGACTTTGTTTTCCGTAAATTGCTACTTTGTTATATCTTAGATTAGTGCCTTTTATATGCATCAAATGCTACTTTAGTGAGAGACCGATTGTAATTCATTTGTAGAATTGTTTTGTTCTCTCCCCAAGAGGGAAAAATAAGGGACGTCTAAATGTTCTGACATGGCCTTCATGTGGCCAGCACATTTTTGAGTATCTTTGACCAAAGTCAAATGCGTAACCTCTGGGTTATGAGGTTACAAACATCATGAGTGCACAAATGTACAGAGCAGTGAAGCACATCAACCAGTATTATTCTTCCAAATGTTCATTAATTGGCCAGTGCCTTGGGATTGACTTTTCTGTGAGCTTGGCGCAGATTTTGTAATATACTCCATTGTATTGTTCTATGATGATGGTCATAAATTTGTATAATTGCCATAAGTTTGGTATTGCTGAATGTTCTTGATAAGTTGAAGGTGTTATGAAA

Function

symbol description
bicc1b Predicted to enable RNA binding activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in diffuse cystic renal dysplasia. Orthologous to human BICC1 (BicC family RNA binding protein 1).
bicc1 Enables RNA binding activity. Involved in negative regulation of canonical Wnt signaling pathway. Predicted to be active in cytoplasm. Implicated in diffuse cystic renal dysplasia.

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K18756 BICC1, BICC; protein bicaudal C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_01708628_01744282.mRNA False 2402 mRNA 0.55 17 1708520 1744282
TU227734 True 3413 TUCP 0.38 3 1706068 1715517

Neighbor

gene id symbol gene type direction distance location
CI01000047_01654684_01688086 PHYHIPL, PHYHIPLB coding downstream 20212 1654138 ~ 1688308 (-)
CI01000047_01470439_01470729 NA coding downstream 237726 1470399 ~ 1470794 (-)
CI01000047_01404421_01451987 NA coding downstream 256467 1404371 ~ 1452053 (-)
CI01000047_01375108_01392690 RHOBTB1.S, RHOBTB2, RHOBTB1 coding downstream 315830 1374913 ~ 1392690 (-)
CI01000047_01373782_01374697 NA coding downstream 333666 1373782 ~ 1374854 (-)
CI01000047_01813106_01813800 NA coding upstream 68575 1812857 ~ 1814122 (-)
CI01000047_01823330_01823581 NA coding upstream 78990 1823272 ~ 1823581 (-)
CI01000047_01824882_01828103 TFAM coding upstream 80600 1824882 ~ 1828952 (-)
CI01000047_02317565_02318902 DKK1B coding upstream 572917 2317199 ~ 2318963 (-)
CI01000047_02325268_02476792 PRKG1A, PRKG1, PRKG1B coding upstream 580986 2325268 ~ 2476792 (-)
G200850 NA non-coding downstream 8279 1699974 ~ 1700241 (-)
G200847 NA non-coding downstream 13069 1695217 ~ 1695451 (-)
G200827 NA non-coding downstream 81674 1626621 ~ 1626846 (-)
G200711 NA non-coding downstream 101067 1606841 ~ 1607453 (-)
G200712 NA non-coding downstream 101868 1606285 ~ 1606652 (-)
G200869 NA non-coding upstream 116300 1860582 ~ 1860871 (-)
G200880 NA non-coding upstream 144475 1888757 ~ 1889106 (-)
G200889 NA non-coding upstream 179378 1923660 ~ 1923995 (-)
G200890 NA non-coding upstream 186655 1930937 ~ 1934351 (-)
G200912 NA non-coding upstream 260309 2004591 ~ 2004815 (-)
G200472 NA other downstream 874049 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 1186278 519108 ~ 522245 (-)
G200299 NA other downstream 1440485 267530 ~ 268035 (-)
G202733 NA other upstream 1388031 3132313 ~ 3133652 (-)
G202944 NA other upstream 2053521 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 2469127 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 2534626 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 2830053 4574335 ~ 4576342 (-)

Expression


Co-expression Network