CI01000047_02233861_02257560


Basic Information

Item Value
gene id CI01000047_02233861_02257560
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2233593 ~ 2258422 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_02233861_02257560.mRNA
CTAGAAAAAGCGAGGAAGAATAAGGTAATCATCCCACCCTTCAAACCGCCTGGATCCAAGACGTTTAATGCGATGACATCAACCAAGATCAGAGCTAATCCTTTATGAATGTTAATGAGACTCAAGAGGAGGGTAGTGCACTCTGGACCTGAAATCCCAATATAGCTAAGTGTATTACCGATACGGTACACGGAGGCGGTTAAAGGATGAGTCCTAAGACCTGGACTTAGAAATATGATGAGCGAATTCTTATATCATGGTAGGAGTAATGTCGTCATATGGTAAAGGCGAATTCATCATGAACAACATCACTGGAGTTATCAGCACTGCCAAGCCACTGGACTACGAGAGCAACAGCAGTTACGTCCTCCGCGTGGAAGCCGACTCCATGAGGGTGGTGTCGTCCAATCTACGAGCCCCATCCAAAAGTGGCGTTTTTGCTCATTTTATTCATTGTCTTTGGCTTTCAATGCTCTTCAGTGGCAACACAGCAAAGGTCTTCATTGATGTGCAAGATGAGAACGACCATCCTCCGGAGTTCACTAAGCCCTTTTACCTCGGTGGGGTTGCAGAGGATGCCAAGACCTTCACCTCTGTTTTACAGGTCCAGCCTCTGTTTTTCTCTGTAGTATCCTTTTCTTTTCTCTATCTGCAAGTTCTTTTCTCTCGAAATGACTTTCTGTGTTCTCTGACTTACCGTTTCTCATTCATATCTGTTTTTCAAGCCTTTATTCTACAGGCTCTGGATAAGGACACAGGGAATTTCAGTGCCATGCTGTATAGGCTGATTATCCCCCCTACTACTGACGGAAAAGACGGCTTTGTTATTGAGCCCTTCACAGGCGTAATTAAGACAGCCATCATGTACAGGAACATGCGGCGCTCCTACTTTAAATTTGATGTGGTGGCTACAGATGACTACGGGAAGGGACTCAGCAGCAGCGCTCAAGTGGTGGTGTCAGTGGTTAACCAGCTGGACATGCAGGTGGTTGTATCCAATGTGCCGCCCACTGTAGTTGAACAGAACAAGGATCAGCTGATTGGCAGCTGTGAATTGGGATATCTGAGGCACTGCAGGATTTTAGAGCGCTACGTCCAGGATCAGATTCCAGGAGCTAAAGTAGTTGTGGAGTCAATCGGGCCCCGGCGTTTTGGTGAAGGTTATGAACAGGAGGACTACTCCAAATCTGACCTGATGGTATATGCAATCGACCCTCTGACCAACAGAGCTCTCTCAAGACAGGAGCTCTTCAAGTTTTTAGATGGGAAGTTATTGGACATCAATAAGGAGTTTCAGCCCTACCTAGGTCGGGGAGGACGCATTCTGGAGATCCGCACACCAGATGTGGTGGAGAGCGTGAAGAAGGCAGTTCAGTCTGTTGGATACACCGAAGGAGCCCTGCTGGCCCTGGCCGTCATCATCATCATACGGCAGGCAGAATGTGCAAAAACAGCCAGGATCCAAATGGCACTTCCCACCGGCAAATCCGGAGGTGCTGCCACCAACAATCTGTATGAAGAGCTCGGCGACAGCACCATGACTAAGAGGTGTGTTCTGAAGGATGGCGATCGGCAGCGTCTAATTAGCTCATTTGCCACCCGTGCCATCGCTGCTCACAAGCTGTCCACTGCTAATGGAATCTTGCTGAACAACTTGCCTAAGTCGGAAAGCAACATTACCTTCCTTTCAGATGAGAACCCGCTTACTACAACCAACCCCTTGTACCATGATGACGGCACCCTCAGCAGCCCTGAGCACCAAAATCGAAGGTACCTCCTGGGCATGTATTCACCCAGCGTGAGAAGTCTGAGAAAGTCCATCCTGCGCTTCCCATCTGCAAGCTCAGGACACTCCTGGACTTTACCCTCTAGGTTACACAAGTGTGAGACCAGTGAAGCCCTACGGAGTAGGAGGGTGGTGATGGACCCAGTTCAGTGGGAGCTGCAGCTTCTGAAGTCTGGCCTTAAGGACAGTAAAGAAATGATTGATGGGATTGATGGGTTTGATGGTTTTGATGGGCTTGTGGACGAAGATCCAGAGCCCAAATTGTCAGTAAAAGAGCAGGCACGGCAGTTTGAGCAGCAGGCCATGCTGGACATGAGGCAGAAGCAAGGCCAGGACTCTCGTGGGTCACTCTCCTCTGAAATTATTCTCTCTGTTTTTGAGACCCCACAGTCTTCATTCATGGGACATAACAACAGGCCCCCAGCCATAATCATTACCCAGAGTGATGGAACACCTCCACCCAGTTACAAGCCCACTCCTCCAGTGCTGCGGAAGTACAGCAGATTGACTACCTATCCTGATGAGGAGTCTTACGAGGTCAATGTGGAGATCATCCCTGACCCTCCAGATCCGGAGCCTCCCAAGAGGGAACTCAAGGGGATCCTTAAGAATATCCAGAACATAGCAGATATAGAGAAATCCATTGCCAACATGTACAGTCAAATAAATAAAAAGCAGTGCCCGCCAAAGATTGTCCCCAAACCACAAGTGTCTGTTGAACCAGAGGCTGGCGTGTCAGAAGTGGAGCCTGTACAAGAAGCACCACCACCAGAGCCCAATCCAAACATGAACTCACTAGTGGAAGAACTGGAAAAACGCTTTCCATCTCAGTCCACTATCCTGTGACACTCTCTTTGTCCATGTTGCTATTACTCTTTTAGAGGCTGTTCACTAGGGCTGGGACAATACATCGATTATCGATTTGCGATACAATGAATCTGGAACGATTCTGATCTTTTTCCGAATGCGGATCACGATTCTCTCTTGAATCGATTCTGAGCTTAGTTTTTAACAGCAGATGGCACTACATGCTTTAGAAACACACATAACGTTATCTGCTTGCTTTCAGTTCCTTTACACACATCACTTAAACCTAACATAATCATTCATAAAGTTTGAAAAGGTTGAAGCGAATTACAAGGGTGTTTGCAGTGGGCCATGTTTACATTAATCTCGCATCATAAAAACATTCTGAGCTGGGGTGCAAGTGTATTTAACCACTTACATGACTCAGCCGAATGCATGAGCGCTCTCAAGCAGTCCTCTTTGTGAGCATTTGAGTATGTGGTTAAAAACTAGCCTGGAGCGCCATCTGCTGTTAAAACTAAGCTCAGAATCGATTTGAGAGAAAAAATATCAGGATCGATCCAGATTCATTGTATTGCAAATAAAGGATCAATGTATTGTCCTAGCCCTACAGTTCACACAGGATGCATTCTAGCAAATATTTTAGTAGTGCGGAACTGTAAAGAAGTCATGTTCATATGTAATATATGGACAAGATGTTCCTGTAGCACAAACAGTAAAGCATGGTGCTAGCAATGCCATGCTTCCAAGGAGGGAATGCATAAATTTATTAAATGTATACTTTCAATGCAATGTAAGTCACTTTGAATTAAATCATAAATGTTAAAATGTTTATCAAACCCCCAGAAACATGTGATTGTTTGTAACCTGACATTGAACCACTAAACTGTATACAAAATAA

Function

NR:

description
Protocadherin-15, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_02233861_02257560.mRNA True 3494 mRNA 0.46 13 2233593 2258422

Neighbor

gene id symbol gene type direction distance location
CI01000047_02105957_02212505 PCDH15B, PCDH15 coding upstream 21079 2105957 ~ 2212514 (+)
CI01000047_01838291_01856228 IPMK coding upstream 377004 1837443 ~ 1856589 (+)
CI01000047_01831728_01834017 UBE2D4, UBE2D4.L, UBE2D1A, UBE2D1B, UBE2D1 coding upstream 399576 1831728 ~ 1834017 (+)
CI01000047_01814588_01822344 NA coding upstream 410658 1814488 ~ 1822935 (+)
CI01000047_01749606_01752688 NA coding upstream 480905 1749606 ~ 1752688 (+)
CI01000047_02265701_02270952 PCDH15 coding downstream 7279 2265701 ~ 2271665 (+)
CI01000047_02496216_02496407 NA coding downstream 237794 2496216 ~ 2496521 (+)
CI01000047_02498979_02505234 A1CF coding downstream 240152 2498574 ~ 2505743 (+)
CI01000047_02562428_02569496 AARSD1 coding downstream 303871 2562293 ~ 2570388 (+)
CI01000047_02581276_02587652 G6PCA.1 coding downstream 322497 2580919 ~ 2589521 (+)
G199895 NA non-coding upstream 223593 2009676 ~ 2010000 (+)
G199875 NA non-coding upstream 281288 1952051 ~ 1952305 (+)
G199850 NA non-coding upstream 324381 1908704 ~ 1909212 (+)
G199841 NA non-coding upstream 344317 1888628 ~ 1889276 (+)
G199838 NA non-coding upstream 350153 1883215 ~ 1883440 (+)
G200005 NA non-coding downstream 64205 2322627 ~ 2322840 (+)
G200006 NA non-coding downstream 64538 2322960 ~ 2325338 (+)
G200015 NA non-coding downstream 76680 2335102 ~ 2335321 (+)
G200016 NA non-coding downstream 76938 2335360 ~ 2335799 (+)
G200017 NA non-coding downstream 77845 2336267 ~ 2336468 (+)
G199386 NA other upstream 1268137 929871 ~ 965456 (+)
CI01000047_00773429_00831230 EXOC6 other upstream 1400983 773429 ~ 832610 (+)
G199401 NA other upstream 1416509 816480 ~ 817084 (+)
G199380 NA other upstream 1771917 460019 ~ 461676 (+)
G200003 NA other downstream 58441 2316863 ~ 2318962 (+)
G200076 NA other downstream 262174 2520596 ~ 2577997 (+)
G201186 NA other downstream 760283 3018705 ~ 3088187 (+)
G201387 NA other downstream 1438094 3696516 ~ 3701860 (+)
G201599 NA other downstream 2157391 4415813 ~ 4482457 (+)

Expression


Co-expression Network