CI01000047_02945353_02965219 (TBC1D12, TBC1D12B)


Basic Information

Item Value
gene id CI01000047_02945353_02965219
gene name TBC1D12, TBC1D12B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2945353 ~ 2965377 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_02945353_02965219.mRNA
GTTATCCACCCAGTGTGGTCCAGAAGTGCAGTGTCATCGTCTCCGAGCATAGTGGGCATTCAGTAGATTCACCTGTGAAGCTGATGGTGGAGTCATCTTCCTCTGGAGGCAGGGGTGCTGAGGAAGGCGGACCACCTCCCCGCATCTCAGATGCTACAGACAGGCAGGAGAACATAATTCAAGGCATGTTCTCCCATTCTGGTACATCGCAGACAGAGAAAAACCAATCGCAGAGAAGCCAGGACCATGAGGTGCCAGAGTCATGTGATAAAGTACAGCATCAGACCAATACCCAGCCATGTGGCACTAAGCTCCCAAATGGACATGCAAGCCTCAATGCACATGAAGGGACTGAAGGCGACTTTCCTAAGTCATCTAATCCTACAGGAAGCTACTTGAATTCTAAAGAAGACCATATGATGGGAAACGGTGAACTTTCGGCAGACTCCAAAGGCGGTGCCGTTTCTTCTACATCTCTGATAAACCAGTCACACTCAGAAATAACTCTACCACCTCAAGATGGAGCTGAGGACAGATGTTCAAATACCCAGGATTCAGTTTTCAAGACAACGCATGGCGAAGAAGGAGAGCTGTGCTCGTCAGCCAGTCCGTCAACTCTAAAACACTCTCTCAGGACATTTTCCTCTAGCTCTTTCTTCAACACTGACTCTGCTCCTCTCAGTCCAGATGATGACGAGACCTTTTCCACATCAGATGTACCTGATGACTTAAGGTTCATGGACGTGAGTCTGAATTCCAGGAACACTTATGAAATCAGCCGTCGTCAGAGCGCCCCAGACAACATCCCTGATGTGTTGAGTGTTGCTGCCGCAGATCTGACTCTCAGCCAGAGGAAACACGGCATCTCGGAGATCTTTAGCAGAAGTCTGTTCTCCAGAAAGCAGAGGGAGGCCCAGAGTGTACCAGGATGGAAACTCTTTGGAAAGGTCCCGCTGAGAGAGAGTCCCCCCAAAGACTCCAAAACCATACAGCAGGAAGGTAACCCAGGCAATCTCACATCTGTATCTACACCCAATCTCTTAAGTTCAGGGGAGTACGAGGCCAAGGTGTCTAAATCCAGCCAGAGTCCCTCCCTGCCCACCCAGAGCCGACGGAAGAACCTGGAATTCGAACCGCTGTCCACCACAGCGCTCATATTAGAGGACCGCCCCGCGAACCTCCCTGCTAAGTCGGAGGAGGAAGCCCAGCGCCACCGTCAGGAGTATGATGAAATGGTGGCAGAGGCGAAGAAGAGAGAGCTGAAGGAGGCTCAGAAGAAGAAAAAGCAGATGAAGGAAAGATTTAAACAGGAGGAAAGCATCGCTAACGCAATGGTGGTTTGGAACAACGAAATCCTTCCCAACTGGGAAAGCATGCGTGGCCTAAGGCGTGTGAGGGATCTGTGGTGGCAAGGTCTTCCGCCCAACGTGAGGGGTAAAGTCTGGAGTCTGGCCATTGGGAATGAGCTGAACATAACCTCAGATTTGTACGAGATCTTTCTGTCACGGGCTAAGGAGCGCTGGAAGAGCTTCAGAGAGACAGGCAGTGAGATAGAGTCAGATGTGGACAGTGCCGACCGTGAGTCCAGTCTGGATGTGATCAAACTGGACATCTCGCGCACATTTCCATCGCTCTTCATCTTCCAGAAGGGTGGGCCATACCATGATCTCCTTCACAGCGTGTTGGGCGCTTACACCTGCTACAGACCTGACGTGGGATATGTTCAGGGCATGTCCTTCATAGCCGCTGTGCTGATCCTCAACCTGGAGGAGGCCGACGCTTTTATCGCCTTCGCCAATCTCCTCAACAAACCCTGTCAGATGGCTTTCTTCAGAGTGGACCACGAGCTGATGCTGAAGTACTTTGCAGCGTTTGAGGTGTTCTTTGAAGAAAACCTCCCCAGACTTTTCAGTCACTTCCAGAGTTACAACCTCACACCTGACCTGTATCTGATAGACTGGATCTTCACCCTCTACACTAAGTCCCTGCCACTAGATGTGGCGTGTCGGGTGTGGGATGTGTTCTGCAGAGACGGGGAGGAGTTCCTGTTCCGTACGGGACTCGGAATCCTGCGGCTCTATGAGGAAGTGCTCCTGCAGATGGATTTCATCCACATCGCTCAGTTCCTGACCAGACTGCCGGAAGACACACCGCCCGAACGCCTCTTCAGCTGCATCGCCAACACTCAGATGGTCAGCTGCAACAGGAAGTGGACACAGGTGTTTAATGCCCTCATAAAGGATAAAGAAATGGAAAAAAGCAGCAGTCCTTCAGTGAAAAATTCTTGAACTCTCACCAATTTCTATTATTTTACTCAAATGAATGCATTAGCAGAGAGGATTGTATAAAACAGCGGTTTAAAGAAGTCAAATACAACGTAAAGAAAAAGCTAAACTTGATTCCTTTGTAACCACGTCAGTATTACTGAAGTTAAACTTTGTATGAA

Function

symbol description
tbc1d12b Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity; intracellular protein transport; and regulation of autophagosome assembly. Predicted to be active in autophagosome and recycling endosome. Is expressed in female organism. Orthologous to human TBC1D12 (TBC1 domain family member 12).
tbc1d12 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity; intracellular protein transport; and regulation of autophagosome assembly. Predicted to be active in autophagosome and recycling endosome.

GO:

id name namespace
GO:0031338 regulation of vesicle fusion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_02945353_02965219.mRNA True 2446 mRNA 0.50 14 2945353 2965377

Neighbor

gene id symbol gene type direction distance location
CI01000047_02889253_02916373 NA coding upstream 28917 2889253 ~ 2916436 (+)
CI01000047_02881833_02887627 NA coding upstream 57609 2881833 ~ 2887744 (+)
CI01000047_02779424_02823789 ITGA3, ITGA3B coding upstream 121564 2779424 ~ 2823789 (+)
CI01000047_02738296_02744806 DLX4B coding upstream 200340 2737872 ~ 2745013 (+)
CI01000047_02602977_02614833 MYST2, KAT7B, KAT7 coding upstream 330271 2602977 ~ 2615082 (+)
CI01000047_02968461_02978899 NOC3L coding downstream 3021 2968398 ~ 2978943 (+)
CI01000047_03097826_03105348 NA coding downstream 132449 3097826 ~ 3105505 (+)
CI01000047_03107522_03112233 NA coding downstream 141916 3107293 ~ 3112436 (+)
CI01000047_03132426_03133335 RBP2, RBP4, RBP coding downstream 166895 3132272 ~ 3133429 (+)
CI01000047_03247894_03250323 NA coding downstream 282226 3247603 ~ 3250759 (+)
G201168 NA non-coding upstream 12739 2932410 ~ 2932614 (+)
G201165 NA non-coding upstream 17584 2927484 ~ 2927769 (+)
G201160 NA non-coding upstream 69285 2875847 ~ 2876068 (+)
G201156 NA non-coding upstream 73899 2871254 ~ 2871454 (+)
G200158 NA non-coding upstream 278751 2657992 ~ 2666602 (+)
G201127 NA non-coding downstream 471 2965848 ~ 2966609 (+)
G201191 NA non-coding downstream 116206 3081583 ~ 3082197 (+)
G201234 NA non-coding downstream 171610 3136987 ~ 3139574 (+)
G201236 NA non-coding downstream 179319 3144696 ~ 3150280 (+)
G201250 NA non-coding downstream 200465 3165842 ~ 3166655 (+)
G200076 NA other upstream 367356 2520596 ~ 2577997 (+)
G200003 NA other upstream 626391 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 1192516 1749606 ~ 1752688 (+)
G199386 NA other upstream 1979897 929871 ~ 965456 (+)
CI01000047_00773429_00831230 EXOC6 other upstream 2112743 773429 ~ 832610 (+)
G201186 NA other downstream 53328 3018705 ~ 3088187 (+)
G201387 NA other downstream 731139 3696516 ~ 3701860 (+)
G201599 NA other downstream 1450436 4415813 ~ 4482457 (+)
G202382 NA other downstream 3850340 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location