CI01000047_02968461_02978899 (NOC3L)


Basic Information

Item Value
gene id CI01000047_02968461_02978899
gene name NOC3L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2968398 ~ 2978943 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_02968461_02978899.mRNA
GTATAAAAAACTTAAATCTTATGTATAATTGTACACCAGCATACATTATTTAACTGTACTTTAATGCATCTTTCACACAAGGCTTCCAAAAAGAACAGGAAAAAGAAGCCTAGCTTCAGAAAATTGCTGAAAACCAGCAATCTGAAGCTAGAAAACAAACTGAAGAATCGTCAGTTCAAGCAACAGAGCTCAGCTAAGAAACAGCGCAAAGAGCAGCGGAAACTCCGGCAAGCCATTACTGATGTCTCCCATCAGACCCTCAAACCCCTGGAGCGCTACAAGAAGAAACCAGAGGATGAAGAAGAGGAGGAGGAGTTCCTGGAAACTCTGCCCACTGATATGATGGATGAGGATGACCTTGAACAGATCAAAGCCATGGCACAGAAAGCTTCCTTTCTGACTCGAGACATCTCATCATGTGCTCCAGTACATGCCAAAAAGCGTAAGTCCGAGCAGCCTGTGGAGAAGTATGAGAAGATGCCCAGGAAGATGCAGCAGAAGGAGGAGAAAGAGCTCATTCACCTGCTGCCCATCAAAGACAAGAGCGGCCTGATCCCTCAGTCCATGGAGAAACCCGTTGTGCCTGAGGCAGAGGAAGAGGAGGAACCGAAGGACCAGGATGAATTAGAAATAGAGGAGGAACCAGAGATTGGTCCATTGCTCACTCCTCAGGAGCAGCTAGAGCTGCGGACTCAGACACTGATGGAGAAGAAACTGCGCATCGCAAGTCTGTCATCAGCGATACTCGCAGATCCACATGTTAACATCAAGAAGCTGAAGGAGTTGAGGGCCATGCTGATGGAGACGGACCCGTGCGTCGCCGTCACTGTCAGAAAGTTAGTCATGGTCTCCCTCATGGAGGTGTTTAAGGACATTGTGCCGGCATATCGAATCCGACCTCTGACGGAAGATGAGAAAGCCACGAAGGTGAAAAAAGATACGCAGCAGCTGAGAGAGTTTGAGGAGGGTCTCGTCAGCCAGTATAAGTTTTACTTGGAGGATCTGGAACAGACAGTCAAAGACTGGAAGCAGAAGAAGCAGAAGAGAAGTAAAGCCGTGTCTCTTCAGTGTTATAAAGGTCTTGCTGAAGTGGCCATCAAGTGCATTTGTGATCTCCTGGTAGCTCTGCCGCACTTCAATTTCCACAACAACATTATAGTCATGGTGGTGCCTTTGATGAACGACCCCGTCAGGACGGTATCTGAGATGTGTTGTGAAGCAGTCAGGACACTGCTGAAACAGGATAAAATTGGTCAGGCCTCATTAGCAATGGTGAAGGTCATCTCAGGCATGGTCAAGAGCAGGAACTATAACGTCAAACCAGAGGTGCTGAAGTCTCTCCTCTGTCTGAGGATAAAAGAAGTGGACATGAAGAAAGATACTGAAGCCACTGCGCCCAAAAAGAAGTTCATGTCGTTCAAGGAGAAGAAGACAAGTTTGTCCAGGATGCAGCGGAAGTGGAAAAAAACAGAGGAGAAGCTGCAGAAAGAGCTTCTAGAAGCTGAGGCTTCAGAGAGCAAGGAGAAGAAAATTAAATTGCACACAGAGACGCTGAACATTGTGTTCCTCATCTACTTCAGAATACTGAAGAAAGCTCAGAAGTCCATCTTACTGCCCTCTGTTTTAGAAGGTCTTGCAAAGTTTGCTCATCTTATAAACTTGGAGTTCTTTGATGATTTGTTGGCGGTGCTCTACGGCCTCATCATATCAGGTGATCTGACGTATCGTGAGAGCCTTCATTGCATTCTCACCTCCTTCCACATCCTCTCAGGACAAGGTGACGTCCTCAACATCGACCCTTTGAAATTCTACAGCCACTTATACAAAACCCTGCTGACGCTGCACGCAGGAGGTGCGAATGATGACACAACGATCGTTCTGCAGTGCCTGGACGTGATGCTGACCAAACGCAGGAAGCAGGTCACCCTGCAGAGGGCGCAGGCCTTCATGAAACGACTGAGCACGCTCGGCCTGCACGTGCTGCCTGACTCCTGTGTGGGCGTCCTGGCAGCCAATAGGACGCTGATGCATACCTTCCCTAAGTGTGACATCCTGCTGGATAATGAAATGCAGGGCAGTGGTGTGTATCTCCCAGAGCTGGATATGCCCGAATATTGTAACCCCCAGAACACGGCACTGTGGGAGCTTCACTTACTGAAGAGACACTATCACCCCGTGGTAAGGAAGTTTGCTGCTCATCTCATGAAAGGTGCTCCTAGTGAAGGTTCAGGCGCTCTCAGCATGGAGCTCAGCAGAAGGACTCCAGTGCAGCTGTTTGAAGATTACAGTGTTAAAGACATGACCTTCAACCCACCTGTTGCAGGTCCTCCCTCAAAGAAAAAGGAACATTTCACAATCGGTCATGCATTTTTAGATCCAGACCTGAAGACACAGATTGATGCTGCTCTTCAAACCGAGAGCGAGCAGACGAGTCTAGACTTTACATCACAACATACACCACAGGAAACATGTATGAATGCACATTAAGGCCTGAAAGTTGGGAAATGCTATTTTCTATCCATTTGTGTAAA

Function

symbol description
noc3l Predicted to enable chromatin binding activity. Acts upstream of or within muscle organ development and regulation of lipid metabolic process. Located in nucleus. Is expressed in several structures, including alar plate midbrain region; brain; head; immature eye; and trunk. Orthologous to human NOC3L (NOC3 like DNA replication regulator).

GO:

id name namespace
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14834 NOC3; nucleolar complex protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_02968461_02978899.mRNA True 2531 mRNA 0.48 20 2968398 2978943

Neighbor

gene id symbol gene type direction distance location
CI01000047_02945353_02965219 TBC1D12, TBC1D12B coding upstream 3021 2945353 ~ 2965377 (+)
CI01000047_02889253_02916373 NA coding upstream 51962 2889253 ~ 2916436 (+)
CI01000047_02881833_02887627 NA coding upstream 80654 2881833 ~ 2887744 (+)
CI01000047_02779424_02823789 ITGA3, ITGA3B coding upstream 144609 2779424 ~ 2823789 (+)
CI01000047_02738296_02744806 DLX4B coding upstream 223385 2737872 ~ 2745013 (+)
CI01000047_03097826_03105348 NA coding downstream 118883 3097826 ~ 3105505 (+)
CI01000047_03107522_03112233 NA coding downstream 128350 3107293 ~ 3112436 (+)
CI01000047_03132426_03133335 RBP2, RBP4, RBP coding downstream 153329 3132272 ~ 3133429 (+)
CI01000047_03247894_03250323 NA coding downstream 268660 3247603 ~ 3250759 (+)
CI01000047_03332251_03337704 MYL3 coding downstream 352848 3331791 ~ 3338294 (+)
G201127 NA non-coding upstream 1789 2965848 ~ 2966609 (+)
G201168 NA non-coding upstream 35784 2932410 ~ 2932614 (+)
G201165 NA non-coding upstream 40629 2927484 ~ 2927769 (+)
G201160 NA non-coding upstream 92330 2875847 ~ 2876068 (+)
G201156 NA non-coding upstream 96944 2871254 ~ 2871454 (+)
G201191 NA non-coding downstream 102640 3081583 ~ 3082197 (+)
G201234 NA non-coding downstream 158044 3136987 ~ 3139574 (+)
G201236 NA non-coding downstream 165753 3144696 ~ 3150280 (+)
G201250 NA non-coding downstream 186899 3165842 ~ 3166655 (+)
G201243 NA non-coding downstream 188218 3167161 ~ 3170434 (+)
G200076 NA other upstream 390401 2520596 ~ 2577997 (+)
G200003 NA other upstream 649436 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 1215561 1749606 ~ 1752688 (+)
G199386 NA other upstream 2002942 929871 ~ 965456 (+)
CI01000047_00773429_00831230 EXOC6 other upstream 2135788 773429 ~ 832610 (+)
G201186 NA other downstream 39762 3018705 ~ 3088187 (+)
G201387 NA other downstream 717573 3696516 ~ 3701860 (+)
G201599 NA other downstream 1436870 4415813 ~ 4482457 (+)
G202382 NA other downstream 3836774 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location