CI01000047_03087382_03094014 (LGI1B)


Basic Information

Item Value
gene id CI01000047_03087382_03094014
gene name LGI1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3087080 ~ 3096017 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_03087382_03094014.mRNA
CGATGTCCTTTGTTTCAAAAAGACTTTATTATTCGCTTCATAATTTACAATTGTTTTCATCAGAAATTGGTAAAGATTCGGTGACTGGAAATTAGAGGGGTAAGGGGGCGAAGTGCCATTTTCTCACATGTAGAACAACTGGTCTTTTATTCCGAAAAAATGTTAAAAATGAAAGCACTGGAAGAGTTGGAGTGATCAGGACAGGCACTTTACTGTTCTCAAATGGCTATGTGAAAAATTCATAGAATGTAACAAAGAAACATTGATCTATTTTATATAGATCAATAGTTCTATTTTATATTATATTATATAATTACTTAAAGATAGATAAATAGATGTTTCTTTGTTACATTATATGGATTTGTATACACACAAACAAACAAACACTTTTAATAAAGGCTTAAACTAAATAGATATGTAACCTTATTGTAAATTTATATATATTTATATAAATATATATATATATTATGATATATAATATGATAATGATATATATGTGACCCTGGACCACAAAACCAGTCATAAGTCGCACAGGTATATTTGTAGCAATAGCCAACAATACATTGTATGGGTCAAGATTATCGATTTGTAAGTATTAAGTAATATTAAGTAAAGATCATGTTCCATGAAGATATTTTGTAAATTTCCTACTGTAAATATATCAAAAATGTATTTTTGTGAGTGGATATGCATTGCTAAGGACTTCATTTGTGTCACTCGATCCTTCAGAAATCATAATATATTCAAATAGAAAACAGTTGTTTTTCAATTCTAATAATATTTCACAATATTTCTGTTTTTACTATATTTTGGATCAAATAAATGCAGCCTTGGTTTGTCTAAGAGACTTCTTATATATATAAGAAGTCTCTTAGGCTCACCAAGGCTGCATTTCTACACACACACACACATTTATATATATAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAAATATATATTTGTAACAATATAGAGTGGGTATATTTGTAGAAATAGCCAACAATATTGTGCCAAAAATCATTATGATATTAAGTAAAATCTTGTTCCATGAAGATATTTTGTAAATTTCCTACCATAAATATATCAAAAAATTTATTTTTGTGAGTGGATATACTAAGGACTTCGTTTGGACAACTTTAAAGGCGATTTTCTCAATATTTAGATTTTTTTTTTTTTTTTGCACCCCCAGATTTCAGATTTCCAAATAGTTGTATCTCGGCCAAATATTCTATCCTAACAAACCATACATCAATGGAAAGCGTATTTATTCAGCTTTCAGATGATGTATAAATCTCAATTGCAAAAAATATGACTGGTTTTGTGGTCCAGGGTCTCTATATTTCATATATACATACATAAATTACATTTAATGGATAATAACATATAGGATTCTATTATAATGCACAATCTATAGGCTAAATGTAAGGTGCTTGAATAATGCTGTAATTAAAGTAGTATATTTTATTAAAAGTAACACTATGAGAAAGTAATAAAAAATGCTTAATGAAAGCATATAACGGCACAGCATTTCTTGCTCTGATTGCTTGAGGGGCGCAGGTGCATCTCTCTAAAACCTCATGAATATTCTCACTATCACTTATTCATGGATTTGGTTCATGCGCATTCACAGTAATAACACCATTGGATAGCAGCTGGTACAACATGATGCAAAAGAGGGATTCTCCAAGGATCTGAAGGAACCCGCGTCGCCAAGGAAATGTTTTTTTTTTTTTTTCACTTTCATTTTTTACTGTTGATTTTTAATTAGACAAAAAATGGCTTAATTTCCAAATCCGCATGTAACTAAGAGGAAATTTGAGCCCGCTTGGATATTTTCAGTATAGCAGAACGAATCGCTTGGATGAGCGCCTGACACGCTGAGACTAGACATTCATCTCACGGACACAACTGAAGGGAGTCGACCAGCAGACCAGCACTTATCACCAGCCGAAAACACCACAGCAGCCCACGGCACTCAGGAACACAGCGGGACAGAATGGGATATGCAAACAGAAGCATAAGAGGATACACTTTTCTGCTGTGGGTTGCCACTGCACTGCTGTTAGTGGAGAGCAGAAGAGGCAAACAGCCTAGATGCCCCTCTGGATGCACGTGCACCAAAGATAACGCCTTGTGTGAAAATGTGAGATCTGTGCCACACAGCTTCCCTCCTGATGTCGTCTCACTATCATTTGTGAAGTCTGGATTCACTGAGATTGCAGGGGGAAGCTTTCTCCACACGCCATCCCTTCAGCTTCTATTGTTTACAGCCAATTCTTTTGACTCCATCGACGAAGATGCTTTCCAAGGCCTGCCACATCTGGAATATCTGGATCTCAGAGGAAACATGTTCAGTTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGATGTACAACACGAATGCAACGGTGGATCAGTTATACTGCAGTGGGCCTCCAGCCTCTCAAGGCAGGAAGATCAATGACCTAGTGCCTCAGTCGTTTGACTGCATTACAGCAGAGTTTGCTTTAAAGAAAACCCTTGTTTTTGAGTCCATGTCTGTGGAGTCCTTTACGTTTGGGAATGATCAGTATGTCGTATATGCCCAGCCTTTCTCTGGAAAATGCAGCTTTTTGGAATGGGACCACGTCAACATGGAGTTCAGAGCTTATGACACCATAGAGAGCACTTCCACAGTGGTGTGCAAGCCGATGGTCATCGATAACCACCTTTTCATCATAGTCGCTCAACTTTTCGGCGGCTCTCACATTTACAAAAGGGACAACTCTGCCAACAAGTTCATCAAAATCCAGGACATCGACATCCTGAAAATCAGGAAGCCCAACGACATTGAGACTTTCCGAGCGGACGGCGAGTTCTTCTTCGTGATAGCGGACAGCTCGAAGGCCGGCTCCACCACGGTGTACAAGTGGAACGGCAATGGCTTCTACTCGCACCAGTCTCTCCATCCTTGGTATCGTGACACGGACGTCGAGTACCTTGATATCGCCGGCAAACCCCATCTTATTTTGTCTAGCAGCTCACAGCGGCCCGTTATCTACCAGTGGAGCAGAAGCCAGAAGCAGTTCGACAGGCGGACGGACATTCCAGAGATGGAGGACGTCTATGCCGTCAAACACTTTAAGGTGAAGGGGGAGCTGTTTGTCTGTCTGACGCGCTTCATTGGCGACTCCAAGGTGATGAAGTGGGACGGCGCTATGTTCACAGAGATACAGACAATGCCCTCCCGGGGCTCCATGGTCTTCCAGCCCGTCTCCATCGGCAACTGGCAGTACGCCATCCTAGGCAGCGACTACTCGCTAACCCAGGTCTATCAGTGGGACACCAAGAAGAGCCAGTTCGTGCACTTCCAGGAGCTCAACGTCCAGGCGCCGAGGGCATTCTCACTGGTGTCCATTGACAACAGAGAGTTCCTGCTGGCTTCCAGCTTTAAAGGGAAGACACAGATTTACGAGCACTTGATGATCGACCTAAGCAGTTAGGGTGCCAATTGAAAGCGCAGAGAACCAGACCCTGGCTATTGTGAAAACACATGCATGATCTAGCCTAGCGCTAATAATAATAATTCCAGATGAATGCCTCTCTAGAAACGCCCTTTGTGTCTTTCTCTGTTGTCACCATCTGTTCTGCACTTTTCATTTTTCCTGTTTTTTTTGTCCCTTTCAACAAAAGCTATTGTTAACGTATTCTCATGCTTGCCGTGTAGTCACTAAAGAGGTATAATAAGGAAACAACAAAGGTCAAATCAGTTAGCTGTTGACGTGATAACAATCTGCCAAATAAA

Function

symbol description
lgi1b Acts upstream of or within brain morphogenesis and myelination. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; eye; head mesenchyme; heart; and skeletal muscle. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-1; childhood absence epilepsy; and familial temporal lobe epilepsy 1. Orthologous to several human genes including LGI1 (leucine rich glioma inactivated 1).

GO:

id name namespace
GO:0048854 brain morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_03087382_03094014.mRNA True 3793 mRNA 0.40 6 3087080 3096017

Neighbor

gene id symbol gene type direction distance location
CI01000047_03085017_03085558 NA coding downstream 1389 3084995 ~ 3085691 (-)
CI01000047_03080182_03082134 SLC35G1 coding downstream 4946 3080086 ~ 3082134 (-)
CI01000047_03002349_03064708 PLCE1 coding downstream 21393 3002349 ~ 3065687 (-)
CI01000047_02939538_02940848 DRD6B coding downstream 144662 2939493 ~ 2942418 (-)
CI01000047_02829408_02858055 ACE coding downstream 228518 2828456 ~ 2858562 (-)
CI01000047_03115498_03127047 PDE6C coding upstream 19170 3115187 ~ 3128105 (-)
CI01000047_03136341_03145907 CEP55L coding upstream 39895 3135912 ~ 3145907 (-)
CI01000047_03149971_03159412 PRRT2 coding upstream 53943 3149960 ~ 3159412 (-)
CI01000047_03163127_03175326 KIF22 coding upstream 66849 3162866 ~ 3175326 (-)
CI01000047_03177108_03216092 ARHGAP27 coding upstream 81066 3177083 ~ 3216132 (-)
G202747 NA non-coding downstream 114119 2966977 ~ 2972961 (-)
G202740 NA non-coding downstream 120481 2965854 ~ 2966599 (-)
G202774 NA non-coding downstream 187263 2896064 ~ 2899817 (-)
G202767 NA non-coding downstream 198285 2888578 ~ 2888795 (-)
G202766 NA non-coding downstream 200562 2886206 ~ 2886518 (-)
G202792 NA non-coding upstream 1824 3097841 ~ 3100120 (-)
G202757 NA non-coding upstream 17265 3113282 ~ 3113978 (-)
G202733 NA non-coding upstream 36296 3132313 ~ 3133652 (-)
G202847 NA non-coding upstream 236149 3332166 ~ 3334561 (-)
G202844 NA non-coding upstream 236833 3332850 ~ 3432629 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1371563 1706068 ~ 1744282 (-)
G200472 NA other downstream 2252609 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 2564838 519108 ~ 522245 (-)
G200299 NA other downstream 2819045 267530 ~ 268035 (-)
G202944 NA other upstream 701786 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 1117392 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 1182891 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 1478318 4574335 ~ 4576342 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002891 lgi1,lgi3,LOC104930305,LOC103387209,LOC106536097 coding CM030139.1 CM030139.1 5715412 ~ 5730295 (+)