CI01000047_03136341_03145907 (CEP55L)


Basic Information

Item Value
gene id CI01000047_03136341_03145907
gene name CEP55L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3135912 ~ 3145907 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_03136341_03145907.mRNA
AATCCTGGATTAGCTGGATTTCAAAGATGGATGTTGCATTACTAAGCACTGTGCAGCTTTATTCACAAATGAATACTGCCGCAAGAGTGTGGAGGATTTCTGACAATGAAACCCAAGCTGGACGACAGTCTTTCAACACCCAAATCTCAAATAAACCCACAACGGTATACCCAGAGCAATATGAGGCCCATGTTGTACTTTTGGAGGACATCACTCCAGACATGGCAGCGAAGGGGGCAAAAGAGACTCTCGTGAATAAACTAGGTTTTAAAAGCAGCAGCTCAAAGTCAGTGGAGATGGAGATCGAGAAACTGAAGAGAGAGAATCAGCAGCTGAAGAAAAGTCTAGAGGACATAAAGAAGGCTGGAAAACATCAACACAATCATTCAGACTCTGACAAAGCCAAACTTCTGGAGAGGATTCTGGCCCTGGAGACGCTGAGGGAGAGAAACTCCCAGCAGCTGCTGGGGAAGGAGCAGGAGATCTGCGGCCTCAAACAGCAGCTGCGCGCCGCTCACGGGGAAGTGGTGTCTTCACTGCAGAGCCAGCTCGAGCAGAAACAACAGGAGGCCGAACAGAGAGAGAAACAGTTCCAGGCTCTCTCAAAGGAGACCGAAGACCTGAAAAACAAGTATTGTGCAGTTTCTGAGAGGTGTGACACACTTGAGAAACAAAAGGTTCCATCTGGTGAGCTTGCGTCAGTGCAGGAGCAGTTGCGAGATGCTCTGGAGAAGAACCATAACTGGCTTGTTTATGACCAGCAGCGTGAGGCCTATGTTCAGGGCGTCTTAGCCAGGACCAAGGAGTTAGAGACGCAGTTAAATGAAGCAAATCAAGCACTCCAACAACAGCTCAAAGAAGCCAGTTCAGATGGCCAGTCTGGGCAGGAGGCTCAGCGTGAGCTGGAGGCCGAACGGGCCCGGGTCAGCCGGATCCAGGCAGAACTTGAGGATCTGAGAGGGAGGTATGAGGAGAAGAGCAGGGAAGCAGCTCAGGCCCGAGAGCAGCTTCTGGAGGAGAGGAAAAGAGACCGGGAGGCTCTGCAGGAGGAGAGGAGGTGTTCATCAGAGCGAACTGCTCGACTGCAGGGTGAGCTGGAGGATGAGAGGAAGAGGGTGGCTGAACTACTGATGCAGGTGAACCTATTACAGAAATCCCTGATGAATCGGCAGGAGGAGCAGAAAAGAATTGCTATACTGGAACAACAGATCCATTTGTCAGCCAAAGAATCTGAAAATGAAAAACTAGACCGTCAAAGTTTACAGCACCAACTGCACAAAGTTTTGAAAGAGCTGCGGAAGGCCAGAGACCAGATTACACGCCTGGAGTCTTCCAAACAGCAGAGAGAGTCTCGTTTCTCTGAGCCCAGCTCATGTAACAGGATGGATTTTGAAAGATTGACTATTCAAGATCGAACCACGTCTCCATCTAAAGTTCATAACATACTAGATGAGAGTGTCCTGGAGTGTCCGAACTGTGGCGCTTCGTACCCCACCAGCCAGCACAGAGAACTGCTCGCCCACCTCGACTACTGCTTCAGCTAAACCTGCTTCACATCACATGCTTCTTTCCACTGTGTATATAAACGTCATTATTTAGAGTGATTTTGTCTTGGTTGATTGTAGTCACCATTCCAAAGAAATGTTTCAGCATTTTATATGAGCTTTTTTTTTTTTTTTTTTAAGAACAGTCATATTTTTAAATTCTTGAATTTGAAAAGTTTGAAGGGACTTTTCTTTTATTCATAAAAGTATTTGTTTATATGGGGCATATTTAAAATATTTTAATTTATGAATTCAAATATATGTTATTTTCTTAGTTCGCTTTTGGTGACCAGGTTGCTCTTTGACATGCAGTTTGCATACATGCAATAAGTAATAATCAATATTCAACATTTAAATCAGTGTTGTACCTAAAAAAAAAAAAATACCATTTTTCACACAGTCCTTCACTGAATTGTTTACTTGAATAAA

Function

symbol description
cep55l Acts upstream of or within cerebellum development; cranial skeletal system development; and regulation of intracellular signal transduction. Predicted to be located in several cellular components, including Flemming body; centriole; and cleavage furrow. Predicted to be active in midbody. Is expressed in several structures, including caudal fin; integument; nervous system; pleuroperitoneal region; and proliferative region. Used to study hydranencephaly and multinucleated neurons, anhydramnios, renal dysplasia, cerebellar hypoplasia and hydranencephaly. Human ortholog(s) of this gene implicated in multinucleated neurons, anhydramnios, renal dysplasia, cerebellar hypoplasia and hydranencephaly. Orthologous to human CEP55 (centrosomal protein 55).

NR:

description
Centrosomal protein of 55 kDa

GO:

id name namespace
GO:0030496 midbody cellular_component

KEGG:

id description
K16456 CEP55; centrosomal protein CEP55

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_03136341_03145907.mRNA True 1973 mRNA 0.45 9 3135912 3145907

Neighbor

gene id symbol gene type direction distance location
CI01000047_03115498_03127047 PDE6C coding downstream 7807 3115187 ~ 3128105 (-)
CI01000047_03087382_03094014 LGI1B coding downstream 39895 3087080 ~ 3096017 (-)
CI01000047_03085017_03085558 NA coding downstream 50221 3084995 ~ 3085691 (-)
CI01000047_03080182_03082134 SLC35G1 coding downstream 53778 3080086 ~ 3082134 (-)
CI01000047_03002349_03064708 PLCE1 coding downstream 70225 3002349 ~ 3065687 (-)
CI01000047_03149971_03159412 PRRT2 coding upstream 4053 3149960 ~ 3159412 (-)
CI01000047_03163127_03175326 KIF22 coding upstream 16959 3162866 ~ 3175326 (-)
CI01000047_03177108_03216092 ARHGAP27 coding upstream 31176 3177083 ~ 3216132 (-)
CI01000047_03223945_03241971 NA coding upstream 77716 3223623 ~ 3242716 (-)
CI01000047_03258353_03261127 NA coding upstream 112446 3258353 ~ 3261825 (-)
G202733 NA non-coding downstream 2260 3132313 ~ 3133652 (-)
G202757 NA non-coding downstream 21934 3113282 ~ 3113978 (-)
G202792 NA non-coding downstream 35792 3097841 ~ 3100120 (-)
G202755 NA non-coding downstream 47212 3077993 ~ 3088700 (-)
G202747 NA non-coding downstream 162951 2966977 ~ 2972961 (-)
G202847 NA non-coding upstream 186259 3332166 ~ 3334561 (-)
G202844 NA non-coding upstream 186943 3332850 ~ 3432629 (-)
G202842 NA non-coding upstream 253942 3399849 ~ 3407492 (-)
G202869 NA non-coding upstream 294920 3440827 ~ 3445116 (-)
G202870 NA non-coding upstream 299308 3445215 ~ 3445658 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1420395 1706068 ~ 1744282 (-)
G200472 NA other downstream 2301441 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 2613670 519108 ~ 522245 (-)
G200299 NA other downstream 2867877 267530 ~ 268035 (-)
G202944 NA other upstream 651896 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 1067502 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 1133001 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 1428428 4574335 ~ 4576342 (-)
G203286 NA other upstream 1728472 4874379 ~ 4876734 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004498 cep55l coding NC_007123.7 CM002896.2 5102670 ~ 5113389 (+)