CI01000047_03223945_03241971


Basic Information

Item Value
gene id CI01000047_03223945_03241971
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3223623 ~ 3242716 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_03223945_03241971.mRNA
AAACATTGCGCATTTAGACTTACAAATAAAAACTAAAAAAATTATCTAATAAATCAATTGTTTACAAAATGTATTTAATCTTCAAAGAAACTAATTTTGCCCATTTCAATTAAAAAAAATCTTGTGTTTTACCCTTTCAAATGCTTGACATTTTTCTAACAAGTAATAATGTTTGAAATATATTTTAAATGCATATAAATTTAATATATACCTTTCCTTTTCTTGTGTGTATAATCATCCCAAATTACCGTATATGAATTCAATTGTAATTTAATGTCAAGTGTAGCTAACCATTTCGCTATATTTGACCAATAGACAACAACAAAAGGGTAATATCAAAATAAATGCATAATGTCTTTCTTCTCTTCTGAACAGGAGGAGTTTTTAATAAAATAGATTTCATCTGCCTACATTTGTACACTTAATAATGTCAAATAAAGCATCGTTTTACAAGCTTTTAACACAAACACCACAGAATCTTTACCACTTTGAATCTTTATATTGACACACATAAAAAAAATATATTATTTCAGACTTAACCAATCTTCTTAAAGAGGTAGGTCAGATGATTAGATATCATGCGGTTTCGGAATCATTTAAAAAATAGTTGTTCTTGCTATATACACATTCAACAAGATCTAATCTGTGCCAGCATTTCCTCATTCATATAGGTGCTTAACATGACCGACCCTTAAAGGCAAACTCAGTATTTTCCAGTCATCTTAGCTTCATTCTTCCCAGAAACATGACTGCTGAGGTTTGCATGGCATTTGACTTATTTAAAGTTGCCATGTTGAATTTCCACAGCTTTGATTGGCAGTGCTTTGGCTCATTTGTAGTCAGTCAGCTGACATCAGGTGACAGTCTGTCTTGGATCAAGGAAAAGATCGCACGGACGCTAAAAGCCCTGCAGAAGCGTTACATCACCACAGACACGGCGGTCACCAGCGAGGACTTGGAGGCGAACCTGCTGTGTTGTGCTTTGGAGGCGGCTTTCATCCATGGAATCAAGAGCAAGTTCATCAGATATGATGGAGGTAATTCGCGCAAAGGAGGATCACGAGGAGCACTTCCTCAACCTGTCTTCTGGAGCCTGTTGAAGACCGTCACACACAGGGATGTAGTTCAAGAACTGGAACGTTTAAGCTTCATAAACTCAGACATTGGTCGCTGCAGAGCATGGGTTCGCCTGGCTCTAAATGATGGGCTTCTGGAGTGTTACCTGACATCGCTGCTTCGCGAGGGGTCCAACTTGAGCTCCTACTACCAGCCCGGGGCTCTTCTGCTGGACCCGGAGGACCGCGAGGTTCTTCTCACCCTGCTGCAGGGCTTGGCCTCGATGACCTTCCAGCTCTCCTATAAATCAGCTGTGCTGAATGAGTGGACTAACACACCACTGGTCCTCGCAGGCCTTTGCCCCCCCACGCCTGCCGACGAGCACCTTCTTGGCCCTAAACGCAAGGAGTCATGGGATACGGTCTCACAGTCATCCGGGGGGTCCGGAAGCTCAGACTGGGCTCAGGAAGCGATCCAGAGGGAGTCGAGGAAAGAGCAGAGCGAGGGATGTGAAACGAGCACTCCACTTACCTCATCAAACCTTAGTCTGAATACGTCAGGATCGTCACAGCTGTCCTCCAGCCTGAGCTCTGATAGTCTGCTTCAGGGTCAGGAGCCCAGGAGTCCTGAAAAAGAACGCTGGAGTTGTGAAACGGAAGTCAGCCACAAAGCACAACCAAACACTGTTACAGAAGAGAACGGCTCCTCTAGTCAGGATTTGAAGAAGGAAGACTTTGATATGTTCATGCCAGCTCCACACATTCTGAGTGACTCTGCCAAACATGCTGTTGAAGGAAAAACTGACATTTCTGAAACAGACACACATCAATTGGATGCACACGTCACAGAGGGATCTAAAGCGGGCTCGGAAAAGACATCAGCTGAAGCGTTACAGGAGACACAAGAAGGAACGGCGGAAGAATCCGAGATTATAGTTAAAACCACAAGACTAAAAGTTAAACATGCAGTCACTGAGACTCCAGAAAGGGAGCAGAAAAGAGAGAACAGAGACTCATCTGTTGAGTCCCCTTCGGTTTCTACATTACCCGAGACTGTTGAGACGACCTCTGACCTTAAAGACCCTGACACTCTTCTTCCAGAGACCTCTGCTGCTCCTAGTTCAGTGGAACAACCCCGACATGCTGCATACAGACGATCCACAAGTACTAAATCCACATCTTGGATATCAGAGGATGACTTCTACAAGCCACAAGAAACGGGCAGTTCTGAAGCATATGCCGTCATTGACATCACACAATCGAACGGGCAGGTGACGCCTACCTCTGAACCAGACACCCTCCAGCCACCACCTAGTGTAGTGCACCGGAGACAGAACGGTCTTCCTAACCCGTTCAGGGGTTTGCTGAAGCTGGGTCAGCTGGAGCGGCGCAGTGCGGTGGGCATGTGGTGGGATTACTACTGCGAGCTCTCTCCGTTTGAGCTGCGGCTTTACATCAATGCAGAGGAGCGCATCTGCTACGAAAACCTGTCCCTGCTGCGCTGCGAAGACGTCCACCTGTCCTCCGGCACCGAGGGCCGTTTTCGGCTCACCTTCCTAGGCAAAAGAATCTACCTGCGTGCCCCATCTCCAGGGGAGGCCGAAGACTGGGTCGATCGCATCATGGAGGCCATCAGCAAACTACGTCCCATGATGAAAGACGAACAGTGGGAGGTGCTGCAAACATCCAGTGATCAGGAAGTCCCCTCGCCGGCACCCTCAAGCCCTGAACGCACCATCTCAGAACTTCCAGATCCACCTCAGTTAGATTGGACCCGTCATAAAGACCCAGAACTAGATGCAATAAAGGAAGCGGTGGTCTATCAGAACTTGGAGGAGAAGGGTTGGCGGCCTCTTGTGCTCTCGCTCTCCCTGGAGACCCTCAGAGGTTACCGGGTCCAAGATGACTCCAAGACGCTGCTCTTCTCATACCCCATTGGGACCATTAGGGATGTGGTTCCAGATGTTTCTCTAGGCAGTCCTGCGTTTTTTAAGATTCTGACTGCGCGGGACACAATGACGCTGAGGGCAGAGAGCGGCGAGGAAGCCCGAGGATGGAGGAGCCTGATCAGAGGAGCACTTGACTCGTATCTGGAGACGGAGGATGATGGAGCTGTTCAGGGTGTCTCTTCGCCCGGCAGCGGCCATGGAGGGAGTGTCCACAAACTGGTTCAACACAGACTGAAGGGTGACGGGGCGTTGCTGGCTCACTTGTCTGAGGTCCCTAAGGAGAGAGGACTAGACGCGCAAAATTACAAATGTGCAGGATGCCCTCGGCAGATCGGTGTGTCTCTGGGGAGAGCCAGACTCTGTGAGTTCTCAGGCCAGTACTACTGCGATTCCTGTCACCAAGGAGACGCAACCATCATCCCCTCCCGCATGGTGCACAACTGGGACCTGACAACACGTGAGGTCTCAAGACAAGCCTTTAAGTTGCTGACTCAAATAGAGCACGAGCCGCTTCTGAACCTTGACGTTTTGAATCCTGACCTGTTTGATCACACTGACATAATGGCTACGGTGCAAACCCTGAGGCAGAAACTTCGTTTCCTTGGAGACTACATCCGCATCTGCCGCAGCGGGATCAGCAAAAAAATCCAACCCAGGTGTAACGTCTGCAAGACGGTGTTTCATTCCTCCTGTAAGGCCAAGTGTTCGGTCTGTCCACGCTGTGTTCGAATACAAAAGTATTTAGAGAGAGACTTGGAGGACTAATTTAGCTGTTAAAAACATGAAGGTTTTTAAGAAAATGGTCATGAAGAAGTTCTCTGTCGCTGTTGTATCTACAGAGCACAAAATCCAGGGTTAGTACCATATTATTGTTGTACTTCATCTAAAAGTTATCTTACGGTATTTGATCGGTATTTCACACTAAGCGTTTTATTGGACACATTGGAAACTCAATCTTAAGTGCACTTATTTACACATTCATATGTACATGTTTAGTCACATCAGAACACCCATGTATGTTCATTTCTCAAAAGTCAACAATGCCAAACAAGTACTTTTCTGCAATTGTGGAAGAACTGTTATTAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_03223945_03241971.mRNA True 4091 mRNA 0.47 9 3223623 3242716

Neighbor

gene id symbol gene type direction distance location
CI01000047_03177108_03216092 ARHGAP27 coding downstream 7491 3177083 ~ 3216132 (-)
CI01000047_03163127_03175326 KIF22 coding downstream 48297 3162866 ~ 3175326 (-)
CI01000047_03149971_03159412 PRRT2 coding downstream 64211 3149960 ~ 3159412 (-)
CI01000047_03136341_03145907 CEP55L coding downstream 77716 3135912 ~ 3145907 (-)
CI01000047_03115498_03127047 PDE6C coding downstream 95518 3115187 ~ 3128105 (-)
CI01000047_03258353_03261127 NA coding upstream 15637 3258353 ~ 3261825 (-)
CI01000047_03271413_03302291 SCN4AA coding upstream 27199 3269915 ~ 3302371 (-)
CI01000047_03321589_03328761 GHRHR2 coding upstream 76976 3319692 ~ 3328761 (-)
CI01000047_03412414_03435209 KANSL1A coding upstream 169682 3412398 ~ 3436183 (-)
CI01000047_03514753_03523245 NA coding upstream 271735 3514451 ~ 3523245 (-)
G202733 NA non-coding downstream 89971 3132313 ~ 3133652 (-)
G202757 NA non-coding downstream 109645 3113282 ~ 3113978 (-)
G202792 NA non-coding downstream 123503 3097841 ~ 3100120 (-)
G202755 NA non-coding downstream 134923 3077993 ~ 3088700 (-)
G202747 NA non-coding downstream 250662 2966977 ~ 2972961 (-)
G202847 NA non-coding upstream 89450 3332166 ~ 3334561 (-)
G202844 NA non-coding upstream 90134 3332850 ~ 3432629 (-)
G202842 NA non-coding upstream 157133 3399849 ~ 3407492 (-)
G202869 NA non-coding upstream 198111 3440827 ~ 3445116 (-)
G202870 NA non-coding upstream 202499 3445215 ~ 3445658 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1508106 1706068 ~ 1744282 (-)
G200472 NA other downstream 2389152 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 2701381 519108 ~ 522245 (-)
G200299 NA other downstream 2955588 267530 ~ 268035 (-)
G202944 NA other upstream 555087 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 970693 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 1036192 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 1331619 4574335 ~ 4576342 (-)
G203286 NA other upstream 1631663 4874379 ~ 4876734 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004489 plekhm1 coding NC_007123.7 CM002896.2 4920451 ~ 4963153 (+)