CI01000047_03271413_03302291 (SCN4AA)


Basic Information

Item Value
gene id CI01000047_03271413_03302291
gene name SCN4AA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3269915 ~ 3302371 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_03271413_03302291.mRNA
AAATGTATTTTTCCTCTCTCCCTTTCAGGAGCTTGGTGTAGAGATTCCCCGTTGAGGTGGTATCTCTTCGCGATGCCAAGATGGCAAGCCTGCTCCCTCGCACAGGCACAAACGCGTTCCGCAAATTCACCCCAGAGTCGCTGGCGGAGATCGAAAGGCTCATCCAGGAGAGGAGCACCAGGGAGGAAGTAGATGGGGTTGAGCAGGAACCACAGGCACCGAGCAGTGATCTGGAGGCAGGAAAGAGCCTGCCCATGATCTATGGCGACCCACCAGAGCATCTCCTCAACACGCCTCTGGAGGATATAGACCCCTTCTATAAAGCACAGAAAACGTTTATTGTCATAAGCAAGGGAAACACGATCTACAGTATGTTCATCATGATCACCATCCTGTCCAACTGCGTGTTCATGACAATGAGTAACCCTCCAGCCTGGAGTAAAACAGTCGAGTATGTCACAGAGTTTGTAGACCTTGGCAATGTGTCAGCACTGAGGACGTTTCGTGTGCTTCGAGCTCTCAAAACAATCACAGTTATTCCTGGTTTGAAAACCATTGTCGGGGCTTTGATTCAGTCAGTCAAGAAGATGGTAGACGTAATGATTTTGACCATCTTTGCACTGGCTGTATTTGCCCTCATTGGCCTGCAGCTGTTCATGGGAAATCTACGTCATAAGTGCATCCGTTGGCCCATTCCCAACAGCACCATCTTTGATGTCAACAACTCCACCATGGTCAATGACACCACCCTCAACGTCACAGATACTTTCGATTTCAAAGCGTACATAAACAATGAAGAAAACCAGTACTTTCTGGAAGGAAGTTTAGATGCTTTAATATGTGGTAACAGCTCTGATGCTGGGAAGTGCCCAGAAGGATACACATGTATGAAGGCTGGGCGAAACCCAAATTATGGCTACACCAGCTATGACACCTTCGGCTGGGCCTTTCTCACCCTCTTCAGAGTCATGACTCAGGACTATTGGGAGAATCTCTTCCAATTGACCCTTCGTGCTGCTGGGAAGACCTACATGCTCTTCTTTGTGGTGGTCATCTTTCTGGGCTCTTTCTACCTCATCAATCTGATTTTGGCTGTGGTTGCGATGGCATACGATGAACAGAATGATGCCAATTTGGCTGAGGCCCGTGAGAAAGAAGAGGAGTTTCAAAGATTGCTAGAGCAGCTCAGGAACCAAGAGGTAGGTAGTAAAGCATCTTTGGCCAGCCAGACAACTCGAAGTCGAGGGTCAAACAGGACAGGTTCCCTGCACAGTCTTGATGGTGATGATGCCATAAAGGACTGTAATGGCCGAATAGTGCCTCGTCTTATCATCAACAGAGTCTCCTCGGACAGAGAGTTATCAGCTGAAGAGGAACACATGTCCATGAGCTCCAAACACAGCATGCAGTACCTGGACCAGCCCAAACTCTCCAAAAGAACAGCAAGTGCTATCAGTGTGCTCACTGCAACAATGGAGGAGTTGGAAGAGGCTCAGAGGGCTTGTCCCCCAGGCTGGTATAAGTTTGCTGATATTTTCCTTAAATGGGACTGCTGCGCTCCCTGGATCATCTTTAAGAAGTGGGTTCATTTTGTAGTGATGGACCCATTTGTTGATCTAGGTATCACCATCTGCATTGTGCTCAACACACTTTTCATGGCCATGGAGCACTACCCCATGAGTCCGGATTTCGAACATGTTCTCTCAGTGGGCAACTTGGTATTTACAGGAATCTTTACAGCTGAAATGGTGTTCAAGCTTATTGCTTTGGACCCCTACTACTACTTCCAGGTGGGCTGGAACATTTTTGACAGTATCATTGTCACACTCAGTCTGGTAGAGTTGGGACTGGCCAATGTTCAGGGACTGTCCGTTCTCAGGTCCTTCCGTTTGCTACGTGTCTTCAAACTCGCTAAATCTTGGCCCACCCTTAGCATGCTGATCAAGATCATCGGCAACTCAGTAGGTGCCCTGGGGAACTTAACGCTTGTCCTGGCCATCATCGTCTTCATCTTCGCCGTGGTGGGCATGCAGCTCTTTGGCAAGAGCTACAAGGACTGCGTTTGTAAGATCTCTAAGGACTGCGAGCTGCCCCGCTGGCACATGAACGACTTCTTCCACTCTTTCCTCATCGTCTTTCGGATCTTGTGTGGAGAGTGGATCGAGACCATGTGGGACTGCATGGAGGTGGCGGGAGCGAGCATGTGTTTGATAGTCTTCATGATGGTCATGGTCATTGGTAACCTTGTGGTGCTGAATCTGTTCCTGGCCCTGCTGCTCAGCTCCTTCAGTGGGGATAACCTGTCTGGAGGTGATGACGATGGTGAGATGAACAACCTTCAGATCGCCATTAATCGCATCACCAGGGGTATAGATTGGCTCAAAGCCTTCGTCGCTAGAATGATGCAACAGATTCTAGGAAAGAAACCTCCCGACAATAATGAAGGAGGAGGGGAAGGAGACATAGAACTATATGCTTTAAACCATCTGGATGAGGGGAAAATGGCGGATGGCTTGACCAACTGTTTGTCTCAAACACTGACTGTGCCTATTGCTCGTTTTGAGTCCGATATTGAAGAGGACTCGGATGAATCTTGTGATGAAGAGGGTGGAAAGGCCGCTCTTAATGATGACGACTCTTCAGTTTGTAGCACGGTGGACTACCGGCCTCCAGAACCTGAGCCTGAGCCCGAAGAGGAAGAAGAACCAGAGCCTGAAGAGCCAGAGTCCTGTTTCACAGAGGGTTGTGTTACGCGATGTCCATGTTTGAGTGTAGACAGCACAGGAGGATGGGGGAAGAGGTGGTGGAACCTGCGAAAAACATGCTTCACCATCGTTGAGCATGACTACTTTGAGACCTTCATCATCTTTATGATCCTCCTTAGCAGTGGAGCACTGGCTTTTGAGGATATCAACATTGAGCGCCGCAGAGTGATCAAGATCATCTTGGAGTATGCTGATAAAGTCTTTACATACATTTTCATAGTGGAGATGTTACTGAAGTGGGTGGCGTACGGTTTCAAGACCTACTTCACTAATGCATGGTGCTGGCTGGACTTCTTCATTGTGGATGTGTCTCTGGTCAGTTTAGCAGCCAATTTAATGGGCTATTCTGAGCTTGGAGCGATCAAATCTCTCAGAACACTCAGGGCTCTTCGACCCCTCCGAGCTCTGTCAAGATTTGAGGGAATGAGGGTGGTGGTGAATGCACTGGTTGGTGCAATTCCCTCCATTTTTAATGTGCTCCTGGTGTGTCTGATATTCTGGCTCATCTTCAGCATTATGGGGGTTAATCTGTTTGCTGGAAAGTTCTACCACTGCATCAACACCACCACAGAGGAACGCTTCCCCATGGATGTGGTCAACAACAAGAGTGACTGCATGGCACTGATGCACACCAATGAGGCACGCTGGGTCAATGTCAAGGTCAACTATGACAACGTGGGTCTGGGCTACCTCTCTCTACTGCAAATTGCCACATTCAAAGGCTGGATGGATATCATGTATGCTGCAGTGGATTCTAGAGAGGTGGAAGAGCAGCCATCATATGAGATCAACCTTTACATGTACCTATATTTTGTTATTTTCATCATTTTTGGCTCCTTTTTCACTCTCAACCTCTTCATTGGGAAAGACATTTTCATGACAGAGGAACAGAAAAAGTACTACAATGCCATGAAGAAGTTAGGTTCCAAAAAACCTGCAAAACCTATCCCTCGGCCGTCGAATGAGATCCAGGGCGTGGTGTTTGACTTCATCACAAAACAGTTCTTTGACATCTTTATCATGGTGCTTATCTGCCTCAATATGGTGACCATGATGATAGAGACAGATGACCAGAGTGCCGAGAAAGAGGATATCCTGTACCAGATCAATTTGGTGTTCATTATCATCTTCACAGGGGAATGCATACTTAAGATGTTTGCGCTCAGACAGTACTTTTTCACTGTTGGCTGGAACGTCTTTGATTTTGTTGTGGTCATCCTTTCTATAGCAGGTCTAATGTTATCAGACATCATTGAGAAGTACTTTGTGTCTCCCACCTTGTTCCGCGTCATCCGACTTGCTAGGATCGGCCGTGTGCTACGTCTCATCAGAGGTGCGAAAGGCATTAGGACTCTTTTGTTTGCCTTGATGATGTCACTTCCTGCCCTCTTCAACATTGGACTGCTTCTGTTCCTCATCATGTTCATCTTCTCTATTTTTGCCATGTCTAACTTTGCCTATGTGAAAAAGCAGGCAGGCATCGATGACATCTTCAACTTTGAAACATTTGGCGGCAGCATCATCTGCCTGTTTGAGATCACAACCTCGGCAGGCTGGGATGGGCTTATGCTGCCTATTATGAACAGTGGCCCTCCAGATTGTGACCCTGACATAGAGAACCCTGGTACAGACGTTCGGGGTAACTGCGGGAATCCTGGCATGGGCATCATGTTTTTCTGCAGTTACATAATCATGTCGTTCCTGGTGGTTGTGAACATGTACATTGCCATCATTCTTGAGAACTTCAATGTTGCTCAAGAGGAGAGTGGAGACCCACTCTGTGAGGATGACTTTGAGATGTTCGACGAGACGTGGGAAAAGTTTGACGTTGATTCTACACAGTTCATCGAATACAACCGTTTGTTTGACTTTGTCGATGCCTTGCAGGAACCTCTGCGAATTGCCAAACCCAACCGCCTCAAACTAATCACCATGGATCTGCCTATTGTAACCGGGGACAAAATCCACTGTCTGGATATTCTTTTGGCAGTTACCCGCGAGGTTCTTGGCGACACCATTGAGATGGCTGCCATGAAGGAGAGCATTGAAGCCAAGTTCAGAATGAACAACCCCACATCCGCCTCATTTGAGCCAATCACCACCACTCTCAGGAGGAAGGAGGAAGAGCGAGCAGCTATTGCGGTTCAACGAACATACCGTAGACATCTCCTCAAACGTGCTATCCGCCATGCCTGCTTTATGCGTCGCTCAAAGAGGAAAGTTAGGAGTCAGGACGATGAAGAACCTCCTGAAACCGAAGGGTTAATTGAAAGGAAAATGGAAGCCTTGTATGGTAGCAACCCAGAACTTGCCATGGCTCTTGAGTTGCAGGCTAGGCCTATGCCGCCTAATCCACAGCCACCTGAGCCCCCCTCGGTCCCGCAGCACAGGGCATCAGTGACCTACCCTCGACCGCAGGGACAACTCATAATCCCAGTGGAGTTCACAAGGGAGGTGATCCTCCGATCTGCACCCACAACATATGGCCTGTGCAGTTCAGAGGATGCAACAATAAAAGAGTCAATAGTATAACTGGCAGCCAATGTCTTTGGAGTATGGACTAAGATAATCCTTGGGTGTAAAATGGAGTATCACCTGCACGCACTGGACAACAGATTCTTAAAGGATTACACAGGACTGCTACAGTGTGACAGCATTGGAATGCCATTTATTGGGAGTACTGTTTTTTTATTATTTAAATTTTATATTCAGGATTATTCTTATTTGTTCCCAATTAGAAATGCCCCAGTATATTTGTCATTACTTAGACAAGTTTTTTTTGCCCTTATATACATATATACGTTTACAGTTGAGCAGTTAGAGCCATTTTAATATTTTTTTTCTGTTACAGCGCCACTAAGTGGACAAGCGCCACAATTTTTTTCATGTGACCTCAGATTGAGCCCATACACATGTGTACCAATTTTGGTTACAATATCTCATTCCATTCAAGAGTTATAGTCATTTATGTAAAAGTGGTCACGCCCACTTTGAACAAATCTGAATCCAAAACCCAGTCCTATTGTGTGAAAAACCTAGGACTAGTTCGTAAAAGTAGGTTTTGCAAGAAATCAAATATGATGGAAAATATATGGCAGAAATGAAATCACTATTATGATGTAGCTGTTTCATCCCCCACACACTAGCACTGAGTAATTCTACTATATGTGGCTACAGTAAATGGGTTATCTAAAAGACAATTTTTGGTAACACTTTATTTTACAGTGTCATTGTTACATATGTTATATGTAGTTACTATAGTAATAACTATAAATTATGCATAATTACATGCAACTAACCCCAAACCAAACCCTAATCCTAATCCTATAGCAAGTACATGTAGTTACTTAATATTACTTAGTACTTAAATGTATAATTACCGTGTAACAAAGACACCTTAAAATAAAGTGTAACCCAATTTTTTTCTCCTCAATAAGCTCCATTTTACAGGTTCGTCTTTACTTTGTCCTAAATAATCTTTATATATACTTGTTTAAAATTATATCAGTATTTATAGCTCCCTGAAACTTAATATTTAAAAAAAAAAAATCTTTCCAGTAATGATCAAAGATTTAATTTGAATAATTCTGATATATAGCTGCACAGATCTCATGAACCATTAGGAACACAAATCTCTGGTACCTATCATCACTCTAATAAGTCTCCTCTGTCTGTTCAGTCGGTTTAGTCTACTGACCTATTTATAATCTTAGTTCATGCCTTACCAGTTTACAGCAGAAACTGATCCTTTACAGTGGGGTGTATATAGAGTCACTTTGAGCAGAATGTGCCACTATGAAAGATATAGATAAACAGCGAAGCTATAGTGCCCAGTGATTGTACTTTTCTTATACTTTTCTTTTTTATATATTTTTAATTATTAATTAATAACTTGAAGCATTGAAAGCATAGTTTGATTGCTGCACACATTTTTAATTCACTGGTAGTCACAACAGCTGGTTGAAAATCTTCCATGCCTGTAGAGTAAATACAAATTTGGTTTTCATGTACTTAATGAGAAGTTATTAAA

Function

symbol description
scn4aa Predicted to enable voltage-gated sodium channel activity. Predicted to be involved in membrane depolarization during action potential; neuronal action potential; and sodium ion transmembrane transport. Predicted to act upstream of or within regulation of ion transmembrane transport; sodium ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in axon. Is expressed in heart; musculature system; nervous system; pectoral fin; and testis. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 16; hyperkalemic periodic paralysis; and paramyotonia congenita of Von Eulenburg. Orthologous to human SCN4A (sodium voltage-gated channel alpha subunit 4).

NR:

description
Nav1.4a

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_03271413_03302291.mRNA True 6795 mRNA 0.45 24 3269915 3302371

Neighbor

gene id symbol gene type direction distance location
CI01000047_03258353_03261127 NA coding downstream 8090 3258353 ~ 3261825 (-)
CI01000047_03223945_03241971 NA coding downstream 27199 3223623 ~ 3242716 (-)
CI01000047_03177108_03216092 ARHGAP27 coding downstream 53783 3177083 ~ 3216132 (-)
CI01000047_03163127_03175326 KIF22 coding downstream 94589 3162866 ~ 3175326 (-)
CI01000047_03149971_03159412 PRRT2 coding downstream 110503 3149960 ~ 3159412 (-)
CI01000047_03321589_03328761 GHRHR2 coding upstream 17321 3319692 ~ 3328761 (-)
CI01000047_03412414_03435209 KANSL1A coding upstream 110027 3412398 ~ 3436183 (-)
CI01000047_03514753_03523245 NA coding upstream 212080 3514451 ~ 3523245 (-)
CI01000047_03689400_03699969 NA coding upstream 387029 3689400 ~ 3699969 (-)
CI01000047_03713156_03716003 NA coding upstream 410785 3713156 ~ 3716003 (-)
G202733 NA non-coding downstream 136263 3132313 ~ 3133652 (-)
G202757 NA non-coding downstream 155937 3113282 ~ 3113978 (-)
G202792 NA non-coding downstream 169795 3097841 ~ 3100120 (-)
G202755 NA non-coding downstream 181215 3077993 ~ 3088700 (-)
G202747 NA non-coding downstream 296954 2966977 ~ 2972961 (-)
G202847 NA non-coding upstream 29795 3332166 ~ 3334561 (-)
G202844 NA non-coding upstream 30479 3332850 ~ 3432629 (-)
G202842 NA non-coding upstream 97478 3399849 ~ 3407492 (-)
G202869 NA non-coding upstream 138456 3440827 ~ 3445116 (-)
G202870 NA non-coding upstream 142844 3445215 ~ 3445658 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1554398 1706068 ~ 1744282 (-)
G200472 NA other downstream 2435444 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 2747673 519108 ~ 522245 (-)
G200299 NA other downstream 3001880 267530 ~ 268035 (-)
G202944 NA other upstream 495432 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 911038 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 976537 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 1271964 4574335 ~ 4576342 (-)
G203286 NA other upstream 1572008 4874379 ~ 4876734 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004487 scn4aa coding NC_007123.7 CM002896.2 4869248 ~ 4893492 (+)
bowfin (Amia calva) AMCG00016717 LOC103474271 coding CM030122.1 CM030122.1 28229775 ~ 28253184 (-)