XLOC_009441 (ctrl)


Basic Information

Item Value
gene id XLOC_009441
gene name ctrl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37820258 ~ 37829160 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018544
GAAATTATAAGTCTCCAAAATGCTCTGGATCATTAGCTGTTTTGCTTTGGTGGCCTCCACTCTGGGCTGTGGAGTGCCAGCCATTAAGCCTGTTATTAGTGGCTACAACAGAATTGTGAATGGAGAGAATGCAGTGTCTGGCTCCTGGCCCTGGCAGGTCTCTCTCCAGcaatcCAATGGCTTCCATTTCTGCGGTGGATCCCTGATCAACCAGTATTGGGTTGTCACCGCTGCCCACTGCCGTGTTCAGGCTGGATATCACTATGTGATTCTTGGAGAGCATGACCGCGGCTCCAGCGCTGAGTCTGTTCAGGTTAAAAGCATCGCTAAGGCCATCACTCATCCTTACTACAATAGTCAGAACTTCAACAATGACATTACCCTGCTGAAACTGTCCTCTCCAGCCCAGCTGACGTCTCGCATCTCTCCTGTGTGTCTGGCGGCCTCCTCCACCAGCATCCCATCTGGAACTCGCTGCGTCACCACTGGATGGGGCAAAACTGGAAGCACCTCAAGCCCTCGTATCCTGCAGCAGACCGCATTGCCTCTTCTGAGTCCAGCTCAGTGTAAGCAATACTGGGGCCAGAACAGAATCACAGACGCCATGATCTGTGCTGGAGCCTCCGGTGTCTCCTCTTGCCAGGGTGATTCTGGTGGTCCTCTGGTGTGTGAGAGCTCAGGTGCTTGGTATCAGGTTGGCATCGTGTCCTGGGGCACCAGTGACTGCAATGTTCGTACCCCTGCCGTCTATGCTCGCGTCTCTTACCTTCGCCAATGGATTGACCAGATCGTTGCCTCCAACTAGAGCTCTTGCTCTCTGAAGAAAATgccaataaaaactaaaaaactatgCTTAATGACTCAGTCAATTTAAACTGTagttaaaacacaaattaatttgtgaattgtgaggtcccggaacagatcggagCAACGGATCCGGCATGAGGAGGGCAGTTGAGGAGGGGATTGGTAAAATCAGGTGCCAGATCCTgtgtgttctggcacaaattaagccctggccGCAGCTCTgagcagtttagttccaaccctaatcaaacacacctggggcctgtttcagaaaacaggttaagttaaaactcagagtagtttaaccctgaaatgagagaaactctgggttttccgttttaaggtttgttaaactcgagaaagcagggtaagtcaagcctgtttctaaaagagagttaactttaactcagattcagttaccgtggtaacttactctgtgaatctaacctggtcctaagcaggttttattctctaaaagtttctgtcggtctcctcctttttttaaagataggcggtatttctcgcattagtcttacatttccacacacctattttagagctcattttggagatgtgcataaaaaagattgatggaaacgtcatgattcacataacttttgaaaatacgcataataaaacttgagcataa
>TCONS_00018545
ATTATAAGTCTCCAAAATGCTCTGGATCATTAGCTGTTTTGCTTTGGTGGCCTCCACTCTGGGCTGTGGAGTGCCAGCCATTAAGCCTGTTATTAGTGGCTACAACAGAATTGTGAATGGAGAGAATGCAGTGTCTGGCTCCTGGCCCTGGCAGGTCTCTCTCCAGcaatcCAATGGCTTCCATTTCTGCGGTGGATCCCTGATCAACCAGTATTGGGTTGTCACCGCTGCCCACTGCCGTGTTCAGTAAAAACCTTTATATTTTCATAAACTGAGTCTAAATATTGGTTTTATGCttcacttttttatatttatttatttatatcacaaCCATGAcattgaaagaaaagaaaaagaaaaggaaacttacaaataaaatacagtagGTGATACTTTAATATGGCCATTACTGAAGCTCTATGTACCGCCGCCGTTCTAAAGgagaaaaatgtgttttttaggtATGACCACAGTTTGGGACTATGCCGCCAGGTGGCACAAAGGGACgagatgcgaacggacagaaatagcctatacattagctgtaaatactctgctacttgtaaataaaaataaacaatgaaacaaagcattataattccttcaatAATCATTAA

Function

symbol description
ctrl Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Is expressed in exocrine pancreas and pancreas. Orthologous to human CTRL (chymotrypsin like).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005575 cellular_component cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040912-147 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Is expressed in exocrine pancreas and pancreas. Orthologous to human CTRL (chymotrypsin like).

Ensembl:

ensembl_id ENSDARG00000068680

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018544 False 1459 mRNA 0.47 7 37820258 37829160
TCONS_00018545 True 617 lncRNA 0.39 3 37827385 37829157

Neighbor

gene id symbol gene type direction distance location
XLOC_009440 si:dkey-42l23.1 coding downstream 13235 37806111 ~ 37807023 (-)
XLOC_009439 si:dkey-42l23.2 coding downstream 20762 37795286 ~ 37799496 (-)
XLOC_009438 si:dkey-42l23.3 coding downstream 40280 37778574 ~ 37779978 (-)
XLOC_009437 si:dkey-42l23.9 coding downstream 45714 37773126 ~ 37774544 (-)
XLOC_009436 si:dkey-42l23.4 coding downstream 52357 37766097 ~ 37767901 (-)
XLOC_009442 si:dkey-238d18.3 coding upstream 2444 37831604 ~ 37850969 (-)
XLOC_009443 si:dkey-238d18.4 coding upstream 25323 37854483 ~ 37875601 (-)
XLOC_009444 CR944667.3 coding upstream 47556 37876716 ~ 37880887 (-)
XLOC_009445 si:dkey-238d18.5 coding upstream 61885 37891045 ~ 37921998 (-)
XLOC_009446 si:dkey-238d18.15 coding upstream 98789 37927949 ~ 37929135 (-)
XLOC_009432 CR848836.1 non-coding downstream 91092 37727834 ~ 37729166 (-)
XLOC_009422 CR848749.2 non-coding downstream 555993 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 945892 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 1035485 36784479 ~ 36784773 (-)
XLOC_009416 NA non-coding downstream 1317069 36500206 ~ 36503189 (-)
XLOC_009453 NA non-coding upstream 466997 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 596388 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 718667 38547827 ~ 38550804 (-)
XLOC_009457 NA non-coding upstream 1072773 38901933 ~ 38910271 (-)

Expression


Co-expression Network