CI01000047_03947036_03979744


Basic Information

Item Value
gene id CI01000047_03947036_03979744
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3946306 ~ 3980325 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_03947036_03979744.mRNA
AGACTACACTGAAACTAGCTGAGAAGCTCAAAGGCCTGCTTAGTCAACTTGAAAACCACTTCAGTTTTGCCCAAAAACCCCTTAAACATATTTTACTGTTACATGCTCAGGAAAATATAATCATACACAGGAACAAAACAAGGTCAAGCATTTAAATAATAAATGGGACCTTGTCTTACCTTCCCGTGGCTCAAAGACCAGGGACTCTTCATTCAGATTTTGATGGAAGGATCGAATCCAGGTTCTGAAGCCAAAAGAACCCTTTCACTATCAAGCCAGAAAGCGGGCCATCAGAGAAAAATTTCATCATGGGCCCAGCCGTCAGTCTGACTGTTCAAAGGTGTCTCCTGAACATGTACATGTACACCAAATTTTAGCACATGCAATTTAGAACTCTGGTTTGTATTTTCTAGTAATTAACATTAAATAAACATTCCAAATTCAAATGTATTAAATTGCACTGCTGTGTAGAGTATTTGTGTTCCTTTTGGAGTTTTTTATTTTTATGTTTATTTTTTTATTTTTTATGAAAATGAACAAACTGTCTGTGTGTTAATGAAGTGCCCTCAGAAGCAGTCAACATGTCTCTTGGACTTTCCATGGTTCAAGATCAACAGTCTTCAAAGCTGGCAATTTGTGGTCCAACCATTCCAAAGAAATGTGTATCAGTTACCACCTACAATGGCATGTGCTTCATCAGTGAAAACAGTGTGTTTAAACTGCCAGTACCGAGCTCTCTGAGAGACTGTCCTGGTCAGATTGACATAGCTTTTCTATTAGATGGATCTGGGAGTGTGCAGAGTTGGAATTTCATTACGATGAAGACTTTTGTTACAAACGTGATCAAGCGTTTTACTGAGCGAGATGCACAGTTTGCTATAGCACAATACTCCAGTGGTTGTGTAATTCACTACAGTTTCAATCAACTCAAAACTCAGGACAGCACATGGGAATCTAAAGTGACAAATATACCGTACCAAAATGGAGGTGTTACAGCAGCAATTTTAAGTGCAGCAGGCACAACACCCATGCGCAGAGAGTCATTTACTATACTCAGGACAACAGGGCATAAAGAAGCGAAGCGTGATTTAAACAAACCGGTCGGCAGTGCTTTTGAAAGTTTCAGTGCAAAACAGGAGTTGAATGACATTGCTACTGATCCAGACACTGATCACGTGTTCAAAGTGACAGACTTTAATGCACTGAATAATATTCTTCAAAAGCTGGAAGAAAACATTATTGCCATTGAAGGAACCCAGACTTCAGGTGATTCCTCCAGAATGGAGTTTGCACAGGATGGATTCAGCACAGCTTTCACATCATATGGAAGCGTGTTAATGAGTGCTGTGGGAGCTTTCCAGTGGAAAGGTGGATATCAGGAATATTTGCCAGACTACTCCTTTCAAACAGGCACTGAGCATGAAAGCTATCTAGGTTATTCACTGGCTACTGCAACAACGTCAAAGACCAGCTTTGCTATTCTAGGAGCCCCGAGATACAAACATAAAGGACAAGTCTTTGTATCACAACTCAGAACCAATCAATTTAAACAGCTGCTGGACTCTCCCAAGCCTCAGATTGGCTCATATTTTGGAGCTGAGGTGTGTGTGGTGGATTTGAACCATAACTCCAATACAGATCTACTTTTGGTATCGGCACCAACATACATGGAGTCTGACCGGGAGGGCATAGTGTTTGTTTACATCTTCATGCGTGAGGCAAATTTAATGTTTTTGGATACACTGGTGGGCATGGCAGGTCAGAGGGGTCGGTTTGGCTCTTCTCTGGCCAGTCCAGCAGATCTGAATGACCAGAGTCAAGACAACCTTCCTGACATTGCTGTTGGGTCCAAGGGAGCAGTTCTGCTTCTCAGTGGAAATGACAAACACTCAATCGACAGTGAATTTAAAAAACAGAAAACCATCGATGTCAAATATGCCATCTATATTGCCTTGATAAGGCATGAAAATTCCACCATCCACATTAATTTTACTTCAGGGAAAAGGGATCTTATGAAACCCGTCCAGCAGATAATAAAGGTTCAGAATGACCTCAGAGAATTAACTTTCAAAGTGTTCATCAGAGTACCAGTGAAACTTGGTGATACTGACATCTGGACTAATTCAAATTTGCAAATTTCTGGCTGTAAAAGTGAGAAAATGGAGAAGCCTGTTACCACCAATTTTACATTGTTGGATGTTATTAAAAATCATCATATCGTGGTTCAGAATGACCTCAGAGAATTAACTTTCAAAGTGTTCATCAGAGTACCAGTGAAACTTGGTGATACTGACATCTGGACTAATTCAAATTTGCAAATTTCTGGCTGTAAAAGTGAGAAAATGGAGAAGCCTGTTACCACCAATTTTACATTGTTGGATGTTATTAAAAATCATCATATCGTGACTGGACTCAGAGCTGCTGTGTTTGAGTTGGTCAGTTCAACATCTCTGGATTATGACAAGAGCAAATACATTTTCTTTTCCTCTGATCCTCAACGCACTGCACCGTCTCTCCAGATTAACACTCAAGTGGAGGTGTATGAGGAGGCGAACCTGACCAAAGAGATCATTGGAGGGGTGATAGGAGGACTGCTGCTACTGGCTCTCCTCACAGCGGCCCTCTATAAGGTATATCGCCTTCATAAAATCAGTTTCAGTCCCTGACACTTTCACCTTTCTACACAATCTATATTTTTAATGCTTACAGCATATTAACGCATATTTTCTCTTTTTACAAGGCTGGGTTCTTCAAAAGCCAGTACAAGCAGATGCTGCAGGAGGCGCAGGGCGATGCAGGAGGAGAGCCAAACATGACACAATAATGTGCACTCAAACAGTTATAAGATACAGTATATGTACTGATTGTGTTTTGTGGGCTTGAGAATGAAACATGGATATATTTAAAACCTCATTGACTGATTTAGAACACCTTATTTAAATGATAACTGGACAATTTTGAAGTTACTTCAGATTACTCGTCATCTCATCAGTGAGCACAACAAGTTACCAAAGTATTTATAGCCTTTTAAATATTTGATTTCCTTCTTTGTTATGAAAACTGATAATGACTGATGATGAACTGTAGCAGAAATATTAGAAATATTGGAGGATCTTTTTCTCACATGCACATTGTTTTTGAGATGTTTTCTATGGAAGCTTGTTGTAAATACAAAAGGTAATTTCGACTTTTTATCTCACAATTCTGACTTTTGTAACTTTTTCTCTGAATTGTGAGATACAAACTTGCAATTCAGAGAAAAAAAGTTACAGTTGCAAGATATAAAATCCAGTTCTGAGAAAAAATTGCAATTGCATCATAATTCTGACTTTTGCCATTATCCATTACACTTATTTGTGTGTCATTATGCATATCTTAATTTGTATTTTAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_03947036_03979744.mRNA True 3396 mRNA 0.39 20 3946306 3980325

Neighbor

gene id symbol gene type direction distance location
CI01000047_03873674_03934985 NA coding downstream 11177 3873459 ~ 3935129 (-)
CI01000047_03855710_03868781 NA coding downstream 76502 3855543 ~ 3869804 (-)
CI01000047_03785018_03800982 NA coding downstream 145302 3784742 ~ 3801004 (-)
CI01000047_03741720_03750331 MAPK7 coding downstream 195931 3741070 ~ 3750375 (-)
CI01000047_03713156_03716003 NA coding downstream 230303 3713156 ~ 3716003 (-)
CI01000047_04022011_04032483 NA coding upstream 41420 4020885 ~ 4032666 (-)
CI01000047_04105620_04111019 NA coding upstream 125098 4105423 ~ 4111184 (-)
CI01000047_04128025_04134725 NIF3L1 coding upstream 147577 4127902 ~ 4134725 (-)
CI01000047_04137872_04142531 CABP5B, CABP5, CABP5A coding upstream 157274 4137599 ~ 4142531 (-)
CI01000047_04213574_04213976 NA coding upstream 233096 4213409 ~ 4214085 (-)
G203046 NA non-coding downstream 35521 3880878 ~ 3910785 (-)
G203041 NA non-coding downstream 39226 3864516 ~ 3907080 (-)
G203051 NA non-coding downstream 40082 3905622 ~ 3906224 (-)
G202998 NA non-coding downstream 40711 3796500 ~ 3905595 (-)
G203067 NA non-coding upstream 24308 4004633 ~ 4075704 (-)
G202959 NA non-coding upstream 64385 4044710 ~ 4052438 (-)
G202934 NA non-coding upstream 95594 4075919 ~ 4086107 (-)
G203082 NA non-coding upstream 111384 4091709 ~ 4091935 (-)
G202733 NA other downstream 812654 3132313 ~ 3133652 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 2230789 1706068 ~ 1744282 (-)
G200472 NA other downstream 3111835 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 3424064 519108 ~ 522245 (-)
G200299 NA other downstream 3678271 267530 ~ 268035 (-)
CI01000047_04285605_04286644 COA3A other upstream 298583 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 594010 4574335 ~ 4576342 (-)
G203286 NA other upstream 894054 4874379 ~ 4876734 (-)
G203840 NA other upstream 1938183 5918508 ~ 5927344 (-)

Expression


Co-expression Network