CI01000047_04065102_04071608 (BRAFLDRAFT_264576, BRAFLDRAFT_218264, BRAFLDRAFT_218328, PPP4CB, PPP4C, PPP4CA)


Basic Information

Item Value
gene id CI01000047_04065102_04071608
gene name BRAFLDRAFT_264576, BRAFLDRAFT_218264, BRAFLDRAFT_218328, PPP4CB, PPP4C, PPP4CA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4065102 ~ 4072324 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04065102_04071608.mRNA
ATGGGTGACATGAGTGATCTGGACAGACAGATCGACCAGCTGAGGAGGTGTGAGCTCATCAAGGAAAATGAGGTCAAAGCTCTGTGTGCCAAAGCCAGAGAGATTCTTGTAGAAGAGAGTAATGTACAGAGGGTGGACTCTCCGGTAACAGTATGTGGTGACATCCATGGACAGTTTTATGACCTTAAGGAATTGTTTAGGGTGGGAGGCGACGTTCCAGAAACAAACTACCTCTTCATGGGAGATTTTGTAGACAGAGGCTTTTACAGTGTTGAGACCTTCCTGCTACTTCTTGCCCTCAAGGTGCGTTATCCAGACAGAATCACCCTGATTCGGGGAAATCACGAGTCCAGACAGATCACACAGGTGTACGGCTTTTACGATGAGTGTTTAAGAAAATACGGCTCGGTCACGGTATGGAGGTACTGCACAGAGATCTTTGACTACCTGTCCCTCTCCGCCATCATTGACGGCAAAATCTTCTGTGTACACGGAGGCCTGTCGCCCTCAATCCAGACTCTGGACCAGATCAGAACCATTGACAGGAAACAGGAAGTGCCTCATGACGGGCCCATGTGTGATCTTTTGTGGTCTGATCCTGAAGACACCACCGGCTGGGGCGTTAGTCCGCGAGGTGCTGGATATCTGTTCGGCAGCGACGTCGTGGCCCAGTTCAACGCCGCCAACGACATCGACATGATTTGCAGGGCGCACCAGCTTGTCATGGAAGGATACAAGTGGCACTTCAACGAGACTGTTCTCACTGTGTGGTCTGCTCCGAATTACTGCTACAGATGTGGTAATGTGGCGGCAATCTTGGAGCTTGATGAGCACCTGCAGAAAGAATTCATCATTTTCGAAGCTGCTCCACAAGAAACGAGAGGCATTCCCTCCAAAAAGCCCGTCGCTGACTACTTCCTGTGAGCTTCCTGTGTCTTTAGGATGCAAGCACTCTCAACAGGAAGTGGTGCCCTGTGTGTACTTGTATTTCTGTTTCTGTTTCCCTTTCCCTGCCCAACTGTCTTAATTGTGCTTTTTTTTTTTCTTTACTTTCTCTGTAATATTCCGTTTTTTTTTTTTTTATTATTATTCTTTCCATCCACTTTCACATTCTTTCACTTTGCCATCAAGACACACATTGGCATTATATTCTCACCCACTGCTGTGAAATCTCTCGCTCTCAGACTCATTGTATGCTGTAGATGTAGACGTTTATTATGTATGTGAATAGCAGTAGGGGAAGGTGGAAGTTCCTCAGAAAGCTGCGATTTGAAACGGCAGGTTGTTGGACTTTTTTTTTTTTTTTTTTTTCTCCCCATTTTCTTTCTGTACATTCTCTTCTCACGTAAGTTGTAAATGTGTAAGAGAATGGGTATGATATATTTCCTGATTTTATTATATTTTAGTTTTTTGTTTTCACCCAGTCATCACAGTTTCACAGCTTTTGAGTTTTGTGAAGGAAACGACTGCAGATGCTGAGCGCCCGACACTGCAGTGATATATATATATGGACATTAACTACACTGGAAAACGTTAACACCACACACAAACCAAACTGGATTTAGAAAATGTGCTTTTTCCCTCTTGACTGTTCTCTCTCTATAGGACGTATTGTTGATTTTTATTTTTAATTTGTGAAA

Function

symbol description
ppp4ca Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Acts upstream of or within angiogenesis; central nervous system development; and determination of ventral identity. Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in blastoderm; brain; and head. Orthologous to human PPP4C (protein phosphatase 4 catalytic subunit).
ppp4cb Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Acts upstream of or within determination of ventral identity and positive regulation of BMP signaling pathway. Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in blastoderm; fertilized egg; and head. Orthologous to human PPP4C (protein phosphatase 4 catalytic subunit).
ppp4c Enables protein serine/threonine phosphatase activity. Involved in regulation of double-strand break repair via homologous recombination. Located in cytosol; nucleoplasm; and plasma membrane.

GO:

id name namespace
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04065102_04071608.mRNA True 1640 mRNA 0.44 8 4065102 4072324

Neighbor

gene id symbol gene type direction distance location
CI01000047_04056077_04061495 NA coding upstream 3607 4056077 ~ 4061495 (+)
CI01000047_04040223_04054395 NA coding upstream 10707 4040120 ~ 4054395 (+)
CI01000047_04012371_04020979 ALDOAA, ALDOA, ALD, ALDOAB coding upstream 43847 4012324 ~ 4021255 (+)
CI01000047_03823906_03854710 NA coding upstream 210288 3822146 ~ 3854814 (+)
CI01000047_03778996_03783444 NA coding upstream 281658 3778996 ~ 3783444 (+)
CI01000047_04075849_04088601 EIF3CL, EIF3C, EIF3C.L coding downstream 3525 4075849 ~ 4088917 (+)
CI01000047_04096532_04103860 PRODH2 coding downstream 24208 4096532 ~ 4103877 (+)
CI01000047_04120765_04127370 NA coding downstream 48441 4120765 ~ 4127633 (+)
CI01000047_04153298_04179343 TAOK2A, TAOK2, TAOK2B coding downstream 80974 4153298 ~ 4182449 (+)
CI01000047_04183386_04192887 MAZ coding downstream 111062 4183386 ~ 4193026 (+)
G201526 NA non-coding upstream 280 4063009 ~ 4064822 (+)
G201520 NA non-coding upstream 67746 3996459 ~ 3997356 (+)
G201509 NA non-coding upstream 133204 3907608 ~ 3931898 (+)
G201508 NA non-coding upstream 133420 3907414 ~ 3931682 (+)
G201439 NA non-coding upstream 144030 3892803 ~ 3921072 (+)
G201555 NA non-coding downstream 214455 4286779 ~ 4349774 (+)
G201581 NA non-coding downstream 230250 4302574 ~ 4305252 (+)
G201609 NA non-coding downstream 336194 4408518 ~ 4408772 (+)
G201613 NA non-coding downstream 347860 4420184 ~ 4425415 (+)
G201387 NA other upstream 363242 3696516 ~ 3701860 (+)
G201186 NA other upstream 976915 3018705 ~ 3088187 (+)
G200076 NA other upstream 1487105 2520596 ~ 2577997 (+)
G200003 NA other upstream 1746140 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 2312265 1749606 ~ 1752688 (+)
G201599 NA other downstream 343489 4415813 ~ 4482457 (+)
G202382 NA other downstream 2743393 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G37321 NA non-coding NC_053115.1 CM020912.1 10488800 ~ 10490052 (-)
bowfin (Amia calva) AMCG00012339 ppp4c,ppp4cb,LOC105024361 coding CM030138.1 CM030138.1 16436796 ~ 16440071 (-)
mexican tetra (Astyanax mexicanus) G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 misc NC_035900.1 CM008303.1 17961940 ~ 17970999 (+)