CI01000047_04120765_04127370


Basic Information

Item Value
gene id CI01000047_04120765_04127370
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4120765 ~ 4127633 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04120765_04127370.mRNA
GGTCTGGAGAGAAGATAGAAAACACAATGGAAGCATTTAAACATGCTGTCGATGTGGGCACTGAGATGTTGGAGATGGATGTTTACCTCACACTGGATGGCTGTGTTGTGGTTTCACATGATAATAACCTTTTGAGAGAAACAGGATATGACAAAACAATATCGTCTCTTAGATTCCAGGATTTGCCTCTCTATAAAGAGCGACTTGAGGTCACATTTTATGTTGGACACTACAGTACAGGGAAGGACAGGAAGTTTGTGTTGCTGGAAGATGTCTTCAAGGAATTTCCCAAACTGCCAATGTTGCTTGAGATCAAAGAAAACAATGACTTGCTCATTCAAAAGGTCTCTTGTCTTGTGAAGGAATATCGCAGAGAAAGTATTACAGTTTGGGCTTCTGAAGAGTCTGCTGTTATGGCAAAATGTCAGAAGCAGAACCCATCCATACCCTATATGTTCACTATGAGGCGTGGAATACTGCTTTTATTCCTCTTCTATACTGGGCTCCTTCCCTTTTTCCCTCTGGGTGAAAGTATGCTGCTGTTCTACCTGCTCAGGATTATCAACAGGACTTATATTCCAGAGGAATCCTATCTGAAGAACAGATTTGTTGTGTGTCTTCTTCAGAAGTTGTTTATGCGAAAATCTTTGTTTAAACACTTGGTCAAGAGGGGCATGCAGGTGCAGCTGTTTGTGTGCAATGAAGAGAGCGATATGGAAGCTGCATTTGCAGTTGGAGCTACAGGCGTTATGAGCGACTACCCGACCCTCCTGTCAAACTACCTCAAAAAACACCCTCAACCTCCACCTCCTGCTATTTATTAGCTCAAAGGGCATGATAAACATTGCCTTTGAGTAAGAATTTTATCCATCTTTTTCCTACACATAAAGCTTTGCGGGAATTATGGGAGTAAAGCACTTTGTCATTTTAACAGATAACAAATTGTATTTACGTTCTATAGATTCCAGTAAACATTGCTGATAGGGATTAGCAGTGAAAAAGCAGATAAAATTATTTTAAAGAGGCCATGTAAAAAAACTTTGAAAAGATCTGAGAAAGAGTGAGATTTTTAGTTCATTCCAGTAAA

Function

NR:

description
Glycerophosphodiester phosphodiesterase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04120765_04127370.mRNA True 1087 mRNA 0.40 9 4120765 4127633

Neighbor

gene id symbol gene type direction distance location
CI01000047_04096532_04103860 PRODH2 coding upstream 16888 4096532 ~ 4103877 (+)
CI01000047_04075849_04088601 EIF3CL, EIF3C, EIF3C.L coding upstream 31848 4075849 ~ 4088917 (+)
CI01000047_04065102_04071608 BRAFLDRAFT_264576, BRAFLDRAFT_218264, BRAFLDRAFT_218328, PPP4CB, PPP4C, PPP4CA coding upstream 48441 4065102 ~ 4072324 (+)
CI01000047_04056077_04061495 NA coding upstream 59270 4056077 ~ 4061495 (+)
CI01000047_04040223_04054395 NA coding upstream 66370 4040120 ~ 4054395 (+)
CI01000047_04153298_04179343 TAOK2A, TAOK2, TAOK2B coding downstream 25665 4153298 ~ 4182449 (+)
CI01000047_04183386_04192887 MAZ coding downstream 55753 4183386 ~ 4193026 (+)
CI01000047_04198702_04207295 FAM57B, FAM57BB coding downstream 71069 4198702 ~ 4207405 (+)
CI01000047_04214987_04217836 VPS25 coding downstream 87354 4214987 ~ 4218477 (+)
CI01000047_04222867_04253291 NA coding downstream 95049 4222682 ~ 4253711 (+)
G201526 NA non-coding upstream 55943 4063009 ~ 4064822 (+)
G201520 NA non-coding upstream 123409 3996459 ~ 3997356 (+)
G201509 NA non-coding upstream 188867 3907608 ~ 3931898 (+)
G201508 NA non-coding upstream 189083 3907414 ~ 3931682 (+)
G201439 NA non-coding upstream 199693 3892803 ~ 3921072 (+)
G201555 NA non-coding downstream 159146 4286779 ~ 4349774 (+)
G201581 NA non-coding downstream 174941 4302574 ~ 4305252 (+)
G201609 NA non-coding downstream 280885 4408518 ~ 4408772 (+)
G201613 NA non-coding downstream 292551 4420184 ~ 4425415 (+)
G201387 NA other upstream 418905 3696516 ~ 3701860 (+)
G201186 NA other upstream 1032578 3018705 ~ 3088187 (+)
G200076 NA other upstream 1542768 2520596 ~ 2577997 (+)
G200003 NA other upstream 1801803 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 2367928 1749606 ~ 1752688 (+)
G201599 NA other downstream 288180 4415813 ~ 4482457 (+)
G202382 NA other downstream 2688084 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005095 gdpd3b coding NC_007123.7 CM002896.2 3893032 ~ 3904011 (-)