CI01000047_04137872_04142531 (CABP5B, CABP5, CABP5A)


Basic Information

Item Value
gene id CI01000047_04137872_04142531
gene name CABP5B, CABP5, CABP5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4137599 ~ 4142531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04137872_04142531.mRNA
GACAGAGAATTGGCAGATGATGAAATTGAAGAGCTGAGAGAGGCATTTAATGAATTTGATAAAGATAAAGATGGTCTAATTAGCTGTAAGGACCTGGGAAACCTGATGAGGACGATGGGCTATATGCCAACCGAGATGGAGCTGATCGAGTTGGGCCAGAACATCAACATGAATTTGGGAGGGAGGGTAGACTTTGAAGACTTTGTGGAGTTAATGGCCCCAAAGCTTTTGGCAGAAACAGCAGGCATGATTGGTGTGAAGGAACTGCGAGATGCTTTCAAAGAGTTCGATATGGACGGCGATGGCTCGATCACTACTGAGGAACTGAGATGTGCTATGAGTAAATTACTGGGAGAACACATGAACCACAGAGAGATTGACGCTGTCGTCCGAGAGGCGGACAATAATGGTGATGGTACAGTAGATTTTGAAGCACGGTCTACTGTCGTCACCCTCGACGACATCATTTTTATGAATGATGCTACATCCTGTAGGCTTCCAGTAACTAAATATCTCTATTAATCTGTCATTTCTCAGAAAAAAGAAAAGAAAAAAAAAAACTGAAACAAGCCATGTAATCTATGTACTGGGCTGCTGCTGAGAGCAGATGGTGAAGATGAGAAATCACTTTTAAGAGAAACTTTCTTTGGAAGATTAGAGGGGATAATGGAAGGATGATGGGATGAGAGGCACTGAAAGATTTTGGACTGTTTATGAGCAAAGTGATGTGGACGTACTGCAAAAACTGTACAGAAGGAGAAAAAAAAATGAGACACTTGTTTGAAACGAAATAAA

Function

symbol description
cabp5a Predicted to enable calcium ion binding activity. Is expressed in eye. Orthologous to human CABP5 (calcium binding protein 5).
cabp5b Predicted to enable calcium ion binding activity. Is expressed in notochord; otic vesicle; and retinal inner nuclear layer. Orthologous to human CABP5 (calcium binding protein 5).
cabp5 Located in cytosol.

NR:

description
Calcium-binding protein 5

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04137872_04142531.mRNA True 795 mRNA 0.42 5 4137599 4142531

Neighbor

gene id symbol gene type direction distance location
CI01000047_04128025_04134725 NIF3L1 coding downstream 2874 4127902 ~ 4134725 (-)
CI01000047_04105620_04111019 NA coding downstream 26415 4105423 ~ 4111184 (-)
CI01000047_04022011_04032483 NA coding downstream 104933 4020885 ~ 4032666 (-)
CI01000047_03947036_03979744 NA coding downstream 157274 3946306 ~ 3980325 (-)
CI01000047_03873674_03934985 NA coding downstream 202470 3873459 ~ 3935129 (-)
CI01000047_04213574_04213976 NA coding upstream 70890 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A coding upstream 142696 4285227 ~ 4286694 (-)
CI01000047_04289186_04338565 NA coding upstream 146532 4289063 ~ 4339770 (-)
CI01000047_04345335_04375341 NA coding upstream 202596 4345127 ~ 4375434 (-)
CI01000047_04385029_04397861 NA coding upstream 242016 4384547 ~ 4397861 (-)
G202997 NA non-coding downstream 42707 4094355 ~ 4094892 (-)
G203085 NA non-coding downstream 43978 4093419 ~ 4093621 (-)
G203084 NA non-coding downstream 44188 4093178 ~ 4093411 (-)
G203082 NA non-coding downstream 45664 4091709 ~ 4091935 (-)
G202934 NA non-coding downstream 51492 4075919 ~ 4086107 (-)
G203143 NA non-coding upstream 76866 4219397 ~ 4219733 (-)
G203189 NA non-coding upstream 265942 4408473 ~ 4408827 (-)
G203191 NA non-coding upstream 277628 4420159 ~ 4425359 (-)
G203204 NA non-coding upstream 359674 4502205 ~ 4502522 (-)
G203217 NA non-coding upstream 393810 4536341 ~ 4536570 (-)
G202944 NA other downstream 151197 3985342 ~ 3986402 (-)
G202733 NA other downstream 1003947 3132313 ~ 3133652 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 2422082 1706068 ~ 1744282 (-)
G200472 NA other downstream 3303128 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 3615357 519108 ~ 522245 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 431804 4574335 ~ 4576342 (-)
G203286 NA other upstream 731848 4874379 ~ 4876734 (-)
G203840 NA other upstream 1775977 5918508 ~ 5927344 (-)

Expression


Co-expression Network