CI01000047_04471595_04476690 (SGCA)


Basic Information

Item Value
gene id CI01000047_04471595_04476690
gene name SGCA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4471125 ~ 4477217 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04471595_04476690.mRNA
CTATAAATGCACATTTCAAGCAAGTATTTTCATACTAAAATGACAAATACTGCACACTTACACACTAAAAATATTTAGAACAATAAATTCTGTTTAAACATACTCATGTGCATAATCAATCGTATTACTGTAAGTTCTGAATGTACAGTAAATGGTTTCTGTCGATATGTTTTGTCCTCAGTCTGCGTAGCCGGTTTTCTGGCGGTCCGGGCAGACATTATCACAGACGCTCCGGTGGGTCAGCTGTTTGTCTATGAGCTACACCGAGAGGTTTTCCAGAGTGAATTTGAGCCTTTTCATAAAGTCTTCCGTATGTTGGAGATATATTACACATACTTACAATATTCAGAATATTTTAAGGCCCAGTTCAAAGCTTCTGTACAGTATAACAGCATGTTTAAAAGTAAGCTGTTTTCAGTATTTCACGTGTCTTGTCCTGATCTGTAGATGGTCATGTTTACAATGATCCCATGGTGTTTAAATGCAACAAGGAGCGATTTCCAGATCTGCCCCAGTGGCTCCGCTTTACCCAGAGGGACCCTTATGAGAACGGATTCCTGTACGGGACGCCGCTGCCACAGGACAAGGGCAGGAACATCATCGAGATATTTGTGATCAACAAACGGAGTTATGACACATTTCGAGAGAGGCTGGTGATAAACGTGGGTCCTGCAGGTATGATGTTGTTTAGTGAAAAACTACTACTAGATGAATCTGCTACTGAAGCTCTCCTGTACTGTGCATCTGATTTTGGGCTTCTTTTCGTCCCAGTAAAGCGCATGCCGTACCAGGCTGAGTTCTTCATAGAGCGGCGAGAGATCGAGAAGGTCCTGCCTGCTGCTGTTCAAAAGGAGATTCAACTGGACATTCAGCATCTGTGGGGAACCGAAAGGCTGGATTTTGTGAACATAACCTCTGCTCTGGACAGGGGCGGCCGCGTCCCTCTTCCTCTTCCAGGATATTTTGAGGGTGTGTATGTGAAACTAGGTTCAGACCGGCCCTTTTCCAAATGTATGCTGAGACTAGAGACGTCGGCGCACCAGAGAGAGTGTGAAGCCGGTGGGAAGATCACCGGAGACTGCAGCACCTGCACAAACCCCATCAACTGCATAACCTGGTGCAAATCTGTCCTGTTTGATCTGTCCAAGCCTGTTCCTCCTGCCCCGCTCCCTACCGTGGGTTCAGGTGTCCTCGCGTGGGGTGGAGAGTTCAGTCCTCCAGAGTCTCCGCCCGAGAGAGATTTCTTCCCCGACTACATAGTCACCGTCATCGTTCCCTTCGCCCTGGCTTTGATCCTCTGTCTCATCCTGGCCTACATCATGTGCTTCTCCAGCTGTACCATCACCACACCATTCAGGATAACGCCAACGAGCTGCGGAGAATGGCGGGCGGAGACAGGCTCACCGTGGATCCGCCTCGGCAGTGCTTACAGCCGCTCCTCATGGCGGAGCAGGCGATGGCGGAGCGCTGAGAAACATTACAGAGATGGAATACTTCACCCAAAAAAGAAAATTTACCCAATAATTCAACACTATCACTGTCAGTTTGCATTAGTCAAATCTGATTAATCTGTTTAACCCCCTGGTAGTCTTCAGTCATTTTAGACAGAAAATTTTCACATTTTAATTTTTTTTTTTTTCAATTTTTTGGTATGCAATATGAAGACACACACGCAAAACATGATTACAAAATGGCAAATGGTGACACTTGTAATCTTCACTGTCAAAAAAGGAAATTAATAGAAAATACAAAAATACAGAGAATCGTTTAGGGTAAATATACAAATTAATATATATACTGGTTACACAATGGTCATAACATATGATTTTCTTTATTTATTCCACCAGATGGCACCAATCTGCTTTCCATGCATTTGTTATGAAATACATTTGCTATATTTAGGTTATCACTGTATTAATACCAGAGGGTTAAAAAGATCAAGTATTGGTGCTTATACCAATCCTTGATCAGTTAATTCCAGACTATCAACAATGGAATGGGAACATGGTCTCTGTTTGGAGTTTGGATCACTATACTAACTCTTATATCAACTATTGTATGCGGTGTAAAATGTAATTTGATGTGAAATATATTA

Function

symbol description
sgca Predicted to enable calcium ion binding activity. Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Predicted to be part of sarcoglycan complex. Is expressed in several structures, including adaxial cell; alar plate midbrain region; brain; cardiovascular system; and musculature system. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2D and muscular dystrophy. Orthologous to human SGCA (sarcoglycan alpha).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04471595_04476690.mRNA True 2095 mRNA 0.43 6 4471125 4477217

Neighbor

gene id symbol gene type direction distance location
CI01000047_04222867_04253291 NA coding upstream 217414 4222682 ~ 4253711 (+)
CI01000047_04214987_04217836 VPS25 coding upstream 252648 4214987 ~ 4218477 (+)
CI01000047_04198702_04207295 FAM57B, FAM57BB coding upstream 263720 4198702 ~ 4207405 (+)
CI01000047_04183386_04192887 MAZ coding upstream 278099 4183386 ~ 4193026 (+)
CI01000047_04153298_04179343 TAOK2A, TAOK2, TAOK2B coding upstream 290259 4153298 ~ 4182449 (+)
CI01000047_04582184_04586359 TMEM101 coding downstream 104787 4582004 ~ 4586796 (+)
CI01000047_04606043_04610846 G6PC3 coding downstream 128826 4606043 ~ 4611322 (+)
CI01000047_04663268_04663847 NA coding downstream 185098 4662315 ~ 4663996 (+)
CI01000047_04678392_04690824 NA coding downstream 200775 4677992 ~ 4691097 (+)
CI01000047_04826817_04834995 NA coding downstream 349600 4826817 ~ 4835216 (+)
G201613 NA non-coding upstream 45710 4420184 ~ 4425415 (+)
G201609 NA non-coding upstream 62353 4408518 ~ 4408772 (+)
G201555 NA non-coding upstream 121351 4286779 ~ 4349774 (+)
G201581 NA non-coding upstream 165873 4302574 ~ 4305252 (+)
G201599 NA non-coding downstream 1134 4415813 ~ 4482457 (+)
G201639 NA non-coding downstream 63082 4540299 ~ 4540501 (+)
G201641 NA non-coding downstream 68676 4545893 ~ 4546137 (+)
G201642 NA non-coding downstream 70035 4547252 ~ 4547455 (+)
G201600 NA non-coding downstream 96151 4573368 ~ 4596630 (+)
G201387 NA other upstream 769265 3696516 ~ 3701860 (+)
G201186 NA other upstream 1382938 3018705 ~ 3088187 (+)
G200076 NA other upstream 1893128 2520596 ~ 2577997 (+)
G200003 NA other upstream 2152163 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 2718288 1749606 ~ 1752688 (+)
G202382 NA other downstream 2338500 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004461 sgca coding NC_007123.7 CM002896.2 3078221 ~ 3093024 (+)