CI01000047_04589853_04594533


Basic Information

Item Value
gene id CI01000047_04589853_04594533
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4589770 ~ 4594636 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04589853_04594533.mRNA
AGTGTCAAAAGGTCTTCATTGTTCATAGATTAAAGGTTAGATTATTAGTGTAACTAATACGCACACTGCTGGCACCAGTTTCCATCACTAAACACACCTCACCATGGTACACGTCAAAGATTTAACATGGTGTAAGATGCCCCTTGGGGTTTCTATTGAGATCTTTAACATTCTTAGCTACGATCCTGCGCTGAGAACGAGCGAGACAAGGGTGCTTGTTGATCTGGTACCTCTACAAACTTTTTTGTTGTTGAGTCTCTTTGAGCTCAAGTTGAAGATGCTCTGCGTCATATTTTTACTCATCACATTCCTAGTTGCTGGGGGCTCAAAGCTCTGCCCTCATCAGTGTTCTTGTTATGAAGCATCTGAGCTGGTGGACTGTCGATCGCGAGGCTTCACTCACATTCCCCACAGTATTCCACATGGCACGTGGCTCTTGGACCTCAGTGGGAATAAGTTGTCGGAGTTGAGGAGTACCTCTTTTACTGGGATATGGGCCCTCCGGGTCCTCCTGCTTTCACAAAGCAACATGCAGGTGGTGCATTCTCAGGCTCTTTCCTCTCTGACCTTCCTGGAAAAGTTGGACCTGTCTTACAATGAGCTCCACGCCCTTCCTCCAGATTTCTCTCAAGGGTTGACCTCCCTTAAAGATCTCAAGCTTTCCCACAATGCTCTGGAGCGTCTTGAGACCCACTCATTCAAGGACCTAGAAAGTCTGGAGAGGTTAGATCTCAGTCACAACCACATTCAGGTCATTGAAGTTGGGGCATTTCATGGACTTACCATGCTAAGGCACCTTAACCTGGCATGGAATCAATTGACGGTTCTCCAAGGAGGTCTGCTGACCATGCAACAAGGTCTTGGGGTTCTTCTCTTGGACCACAATAATATTTTCAAAATTGAAGCGGAAGCTCTGGCTCCCCTACAAACCCTCACCATACTGAACTTAGAAGCCAACCAGTTGAGAAGCCTTAAGTTCAAGACATTCTTAAACCTTCAGACACCCAGCACACATCTGCAGATGTCAGAGAACCCTTGGACGTGTGACTGCGAACTGCATCGTGTTTTCAGTAAGATACTCTACGTCAGGCATCTCCACGTGGATGATTACATGAATATCACGTGCCACTCTCCGCTCTTACTGGCTGGAGCGTCTCTGGGTTTGATGCACAGTCAGCTGTGTATCGCAGAAACAGCCACTGTTCTGATCATTACTGGAACTGTGATGGTCACTGTAGTGGCAGCCATGGTTATGGCAGAGCGGAAGCGAAAAAAGAAAAAGATGAACTTGGAAAAACAAGGAAATGAGCCTATGCCTTGGGAGTCTCACAAATGAAGAAGGGAGGAAAAGTCAACAGCTATTAGAAATACAATCTTTTCTTACAATATCAGACCATACTCACTTCAACATTAAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04589853_04594533.mRNA True 1419 mRNA 0.46 3 4589770 4594636

Neighbor

gene id symbol gene type direction distance location
CI01000047_04575184_04576337 GNGT2B, GNGT2 coding downstream 13433 4574335 ~ 4576342 (-)
CI01000047_04555399_04568166 NA coding downstream 21450 4554822 ~ 4568320 (-)
CI01000047_04479638_04501854 NA coding downstream 87797 4479241 ~ 4501973 (-)
CI01000047_04458864_04461672 NA coding downstream 127676 4458771 ~ 4462094 (-)
CI01000047_04398951_04431817 NA coding downstream 157953 4398951 ~ 4431817 (-)
CI01000047_04596548_04605172 LSM12A, LSM12, LSM12B coding upstream 1344 4595980 ~ 4605172 (-)
CI01000047_04613815_04652751 TANC2 coding upstream 19179 4613815 ~ 4652751 (-)
CI01000047_04703391_04706693 NA coding upstream 108402 4703038 ~ 4706693 (-)
CI01000047_04790377_04795864 CNTD1 coding upstream 195588 4790224 ~ 4796316 (-)
CI01000047_04840115_04844233 SOX8, SOX8A coding upstream 244927 4839563 ~ 4844233 (-)
G203221 NA non-coding downstream 39513 4550020 ~ 4550257 (-)
G203219 NA non-coding downstream 43554 4545569 ~ 4546216 (-)
G203217 NA non-coding downstream 53200 4536341 ~ 4536570 (-)
G203204 NA non-coding downstream 87248 4502205 ~ 4502522 (-)
G203191 NA non-coding downstream 164411 4420159 ~ 4425359 (-)
G203258 NA non-coding upstream 207261 4801897 ~ 4802226 (-)
G203298 NA non-coding upstream 288017 4882653 ~ 4882903 (-)
G203323 NA non-coding upstream 340870 4935506 ~ 4948267 (-)
G203303 NA non-coding upstream 379660 4974296 ~ 4978735 (-)
G203355 NA non-coding upstream 394521 4989157 ~ 4989456 (-)
CI01000047_04285605_04286644 COA3A other downstream 303089 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 375340 4213409 ~ 4214085 (-)
G202944 NA other downstream 603368 3985342 ~ 3986402 (-)
G202733 NA other downstream 1456118 3132313 ~ 3133652 (-)
G203286 NA other upstream 279743 4874379 ~ 4876734 (-)
G203840 NA other upstream 1323872 5918508 ~ 5927344 (-)
G203881 NA other upstream 1448617 6043253 ~ 6043789 (-)

Expression


Co-expression Network