CI01000047_04596548_04605172 (LSM12A, LSM12, LSM12B)


Basic Information

Item Value
gene id CI01000047_04596548_04605172
gene name LSM12A, LSM12, LSM12B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4595980 ~ 4605172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04596548_04605172.mRNA
TCACGCCGTCGCGTGCGTTTACGTAAAGCTCGCGCTCCGGTTTCCCTGGCGGAGAAGATGGCGGCTCCTGGACCGGGGGAGTATTTCAGTGTCGGGAGCCATGTCTCTTGCCTCACTTGTTTAGGCCAACGTTTGCAGGGAGAGGTGGTGGCTTTCGATTACCCGTCCAAGATGTTGACTCTGAGTATCCTTTATTCCTCGGATATCGGTAAGCCCAACCTCAGCGACGTCATCTTGATTAACTTAGCCTATGTTTCAGAGGTGGATATAATTAATGACCGCACTGAGACGCCTCCTCCTCTAGCATCCTTGAATGTTAGCAAGCTTGCCAATCGAGCAAGGACGGAAAAGGAAGACAAGTTGTCCCAAGCCTATGCAATCAGTGCTGGGGTTTCAGTTGAGGGCCAGCAATTATTCCAGACTATACACAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATCATTGTGATGGATGACGTCGTAATCTCACCACCATACCAGGTGGAGAACTGCAAAGGCAAAGAGGGAAGTGCTCTAAGTCATATACGCAAAATTGTTGAGAAACATTTTAGAGATGTGGAAAGCCAGAAGTCGATGCAACGTACACAAGCACAGCAAACACAGAAGGACTCGTCTTTATCCTCCTGAGTGGGGGGTATGGCTCATCTGGGGAGGGCACCACGGGCATCAAGGGCCTAACAGCTGGTCGAAACCAGCGCTCATCTCCCCCTCTGCGTCGTAGTCCGAGGGTGGATGCACCAAGGGCCTAGGGTCTGGAAGATCAACAAAAGAAACAAAAAAACAAAAAAAAAAAGCAAAAATGTTTTAAGAAACATGAGAGTGAAAAGAGTTCATTCTAAATTAGACTTTATAAAGATAATTTAAAACACCAACCATCAAACAAACCATAGTTTCTTTGACTAACAGTGTCTTATCCCCTCTCTGCCCCTTCTTCCTCCTCCTGTGTTTCATCTAAAGATAGCTTTTCATATTTTCTTCTCTCTTACATCCCTCCTTCGCCTTCTATTCCATTTTGTCAAAAAAAAAAGAAAAAAACAAACCAGTCAGAAAAGCTTGTTAGCTTTATTTACTTTGATGCTTTTTTTTTTTTTTTTTTTCTTTGGCTGTTTGTTCTACAAGTGTCTGTCTGTTCTGTATTTTAAACAAAATGTGACTTCAGATGCCACACGTTACAAAGGACATTTTCTAAAATAAA

Function

symbol description
lsm12b Is expressed in brain and spinal cord. Orthologous to human LSM12 (LSM12 homolog).
lsm12a Orthologous to human LSM12 (LSM12 homolog).
lsm12 Orthologous to human LSM12 (LSM12 homolog).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04596548_04605172.mRNA True 1222 mRNA 0.44 5 4595980 4605172

Neighbor

gene id symbol gene type direction distance location
CI01000047_04589853_04594533 NA coding downstream 1344 4589770 ~ 4594636 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 coding downstream 19643 4574335 ~ 4576342 (-)
CI01000047_04555399_04568166 NA coding downstream 27660 4554822 ~ 4568320 (-)
CI01000047_04479638_04501854 NA coding downstream 94007 4479241 ~ 4501973 (-)
CI01000047_04458864_04461672 NA coding downstream 133886 4458771 ~ 4462094 (-)
CI01000047_04613815_04652751 TANC2 coding upstream 8643 4613815 ~ 4652751 (-)
CI01000047_04703391_04706693 NA coding upstream 97866 4703038 ~ 4706693 (-)
CI01000047_04790377_04795864 CNTD1 coding upstream 185052 4790224 ~ 4796316 (-)
CI01000047_04840115_04844233 SOX8, SOX8A coding upstream 234391 4839563 ~ 4844233 (-)
CI01000047_05108733_05109209 MED9 coding upstream 502832 5108004 ~ 5109256 (-)
G203221 NA non-coding downstream 45723 4550020 ~ 4550257 (-)
G203219 NA non-coding downstream 49764 4545569 ~ 4546216 (-)
G203217 NA non-coding downstream 59410 4536341 ~ 4536570 (-)
G203204 NA non-coding downstream 93458 4502205 ~ 4502522 (-)
G203191 NA non-coding downstream 170621 4420159 ~ 4425359 (-)
G203258 NA non-coding upstream 196725 4801897 ~ 4802226 (-)
G203298 NA non-coding upstream 277481 4882653 ~ 4882903 (-)
G203323 NA non-coding upstream 330334 4935506 ~ 4948267 (-)
G203303 NA non-coding upstream 369124 4974296 ~ 4978735 (-)
G203355 NA non-coding upstream 383985 4989157 ~ 4989456 (-)
CI01000047_04285605_04286644 COA3A other downstream 309299 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 381550 4213409 ~ 4214085 (-)
G202944 NA other downstream 609578 3985342 ~ 3986402 (-)
G202733 NA other downstream 1462328 3132313 ~ 3133652 (-)
G203286 NA other upstream 269207 4874379 ~ 4876734 (-)
G203840 NA other upstream 1313336 5918508 ~ 5927344 (-)
G203881 NA other upstream 1438081 6043253 ~ 6043789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005084 lsm12b coding NC_007123.7 CM002896.2 3287783 ~ 3299149 (-)
bowfin (Amia calva) AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding CM030122.1 CM030122.1 27810648 ~ 27817193 (+)