CI01000047_04613815_04652751 (TANC2)


Basic Information

Item Value
gene id CI01000047_04613815_04652751
gene name TANC2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4613815 ~ 4652751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04613815_04652751.mRNA
ACAAATCTTGACAGCGCCTCTCCTCTTTTCCCAGCCACCCTGACCAATTACTCCGAGCCGGTGGACAGGAGCGGGAAACACGGCGATGGCTCTCGAGGAAGCAGCCTGAAGCTCTGGCACTCGCACAGATCCACTCTGGACTCCAGCCTGTACCGTGTGGACGAGAACATGGCCGCCTCCACCTATAGCCTCAACAAGATCCCTGAGCCCAGCTCCGCCCACTATTCCTCTCACCCCACCCCTCTCTACCTCATGCCCCGCCCTAACTCGGTGGCAGCCACCAGTTCGGCCCACCTGGAGGACTTGGCCTACTTGGATGAGCAGAGACACACCCCCCTGCGCACCTCCCTGCGGATGCCCCGACAAAACACGTCCGCGGGCCGCTCCGGGCAGGACCTGCGAGTGCGATTCGCTCCGTACAGACTGCAGGACATCGCACTAAAGCCGCTGCTTTTCGAGGTGCCCAGCATCACCATGGACTCTGTGTTTACTGGCCGTGATTGGCTCTTCCAGGAGATTGACGCCTACCTACGCACCGCCCACTCCGGCACGAATCGTGGCGTAGTTCTAGTGGGCAACATCGGCTATGGCAAGACGGCCATCATCTCACGCCTTGTGGCTCTCAGCTGCCATGGCAACCGCATGCGACAGATCGCCTCTGACAGCCCACAGGCGTCGCCAAAACATGGAGATGGCATCCCTCTCACACAGTCACAGCCTTCCCATGGTACACTGGGAGGAGGAAGTTGCCCTGGAACTCCAGAAATGAGGAGGAGACAGGAGGAGGCCATGAGGAGGCTTGCGTCACAGGTCGTGGCGTATCACTACTGTCAAGCAGATAACGCCTACACCTGCCTGGTGCCGGAGTTTGTGCACAACGTGGCGGCACTGCTGTGTCGCTCGCCACAACTCGCCGCGTACAGAGAGCTGCTGCTGAAAGAGCCGCACATACAGAGCATGCTCAGTCTGCGGTCCTGCGTCCAAGATCCGCCCACTGCCTTCAGACGAGGGAGGAAGATCACTCCGGATGAAGACCTCATCATTCTCATTGATGGTCTGAATGAGGCTGAGTTTCACAAACCAGACTATGGAGACACGATTGTGTCTTTCCTCTGTAAGACCATCAACAAGTTTCCAGCCTGGCTCAAACTGGTGGTGACTGTCAGGACCTCCCTGCAGGAAATCACCAAACCTCTCCCCTTCCACCAAATCTCTCTGGACGCCCTGGAGGAAAATGACGCCATTGACCACGATCTCCAGGGCTACATCCTCCACCGCATCCACAGCAGTGCAGAGATCCAAAACAACATCTCCCTCAATGGCAAGATGGACAACACCAGCTTCGGCAAGCTCAGTTCCCACCTCAAAGCCCTCAGCCAGGGCTCTTTTCTTTACCTGAAGCTCACCTTTGACCTGATCGAACGCGGCTACCTGGTGCTCAAAAGCTCCAACTACAAGGTGGTCCCGGTCAGTCTAGCTGAAGTGTACCTTCTGCAGTGTAACATGCGCTTCCCGACACAGTCATCCTTCGAAAGGGCCCTGCCGCTGCTGAACGTGGCCCTGGCTTCCCTGCACCCGCTTACCGATGAGCAAATCTACCAAGCCATCAACGCTGGCTCAGTGGAGGGCACTCTGGAGTGGGAAGACTTCCAGCAGAGGATGGAGAACCTGTCTGTGTTTCTGGTGAAGAGACGGGATGGAACACGCATGTTTGTGCACCCGTCCTTTAGAGAATGGCTCATATGGCGGGAGGAGGGAGAGAAGACCAAGTTCCTCTGTGATCCCAGGAATGGCCATACTCTTCTGGCTTTCTGGTTCTCCAGACAACAAAACAAACTAAATAGACAGCAGACCATCGAACTGGGTCACCACATACTGAAAGCACACATATTCAAGGTAAGAGTGTTATGCAAGTATGTGATAATAGATAACCATAATGCTCATATTTTACAGGTGTCACGGCTGCTGATATTGGGCGGCGCTAATGTGAACTACCGTACGGAGGTGTTGAACAACGCTCCGGTGCTGTGTGTGCACGCTCACCTGGGCTACATGGACATGGTGAACCTGCTGCTGGAATATGGTGCCAGTGTGGACTCGGCATCTGAGAGCGGCCTCACTCCTCTGGGCTACGCTGCCGCCGCTGGACACCTGGGGATAGTTACTGCCCTCTGCAAGAGGAAAGCAAAGCTCGACCACTCGGACAAGCACGGTCAGTGTGCCCTAGTGCACGCTGCTCTTAGAGGGCACCTGGAGGTGGTGAAGTTCCTCATTCAGAACGCTCAGACTCAGCAGCAGACATCGTCACAGCCTGTGACCTTCAACAAGAGCCTCGCAGTACAGCAGGCCCTTATAGCGGCAGCGAGCATGGGTTACACCGAGGTAACGGCCTGCTGGTGTCACATAATTCTTTGCATGCTTTTTGCTCCTATAGCTACTAATTTTGTCTGTGTCTTTAAGATTGTATCTTATCTCTTGGACTTGCCTGAGAGGGATGAAGAGGACACTCAACGCGCCCAGATTAACAGCTATGATACCCTGTGGGGTGAGACAGCACTGTCAGCAGCGGCAGGGCGGGGAAAGCTGGATGTTTGTCGGCTGCTATTGGAGCAGGGCTCTGCTGTGGCGCAGCCCAATCGGAGAGGGGTGGTGCCACTCTTCAGCTCTGTGCGTCAAGGGCACTGGCAGATTGTGGATCTGTTGGTATTGCATGGAGCAGACGTAAACCTGGCTGATAAACAAGGCCGTACTCCGCTCATGATGGCCGCCTCAGAAGGGCACCTGGACACGGTGGAGTTCCTAATGGCTCAGGGTGCGTCTATAGATCTTATGGATAAGGAGGGTCTCACTGCGCTCAGCTGGGCATGTTTGAAAGGACATCTGTCTGTGGTTCATTGCTTGGTGGAAAGGGGTGCCGCAACAGACCATGCTGATAAAAACGGACGGACGCCTCTCGATCTGGCCGCCTTCTATGGAGACTCAGAAGTGGTGCAGTTCCTGGTGGATCATGGGGCTTTGATAGAGCATGTGGATTACAGTGGAATGCGTCCTCTGGACCGGGCAGTTGGCTGCAGAAACACGTCAGTGGTGGTCGCCCTGCTGAAGAAAGGAGCCAAAATCGGTCCTGCTACCTGGGCAATGGCGACGTCTAAACCTGACATCATGATTATCCTACTGAGTAAACTTTTAGAGGAAGGAGATGGTTTCTACAAGAAAGGTAAAGTGAAGGAGGCAGCTCAGCGCTACCAGTATGCTCTGAAGAAATTTCCCCGTGAAGGATTAAGCGAGGACCTGAAGACCTTTAAAGAGCTCAAGGTGTCTTTGTTCCTGAACTTGTCTCGCTGTCGGAGGAAAATGAATGACTTTGGTATGGCGGAAGAGTTTGCTACCAAGGCTCTGGAACTGAAGCCTAAGTCTTATGAGGCATACTATGCTAGAGCCCGTGCCAAACGTAGCAGCAGGCAATTCGATGAAGCACTAGACGACCTGAGGGAAGCCATAAAGCTGTGTCCCAACAATCGTGAAATCCAGCGCCTCCTTCAGCGTGTGGAGGAGGAGTACAGGCAAGTTACCCAATCAGAGGAGCCAGAGCTTGAACCTCCTCCATCTCCACCACCATCTCCTTTACCAGTGGAGGAAGATGAGGAGCCCCCTCATCATACCCCTCCCCCTGAGCCAAGACTGGATGACATGGAACCTGTTCAAGATTTGTTTGAGGATGACGACTTCCTGGAACAAGAGCTAGAAGCCTCTGGCTCTCCAGTCCGCTACCAGCAGGAGCCTTTACCTAGCCGCCCTAAATCGCCACTGTTGAAGATGAGCAGCCAGCGATCCTTCCAGCTCCAGTCGCAACCTTCCCAGAGCTCTCAGACCAGCCAGCACCACCAGATTCAGGGTCTTCGCCTGCAGCCCTCTATGGCACAGATCGTCCGAACTAGCCAGCCCAGTAACAGTGTGTACAGCCAGTTGGCGCATCCACTCAGCAGCAGGTATCAGGGTAGTTCCATGGATGTGGACAGAGAGAGAGATCGGGAGCCGAGACTTGTGTACCAGCCCTCATTGGATGGCCGGTCAATGTCTCAAGTGCAATCCAGCCTTAGTGTGGGAGCTCTCTGTCAGCACGGGGGCAGAGGTGGGCCTGCCGGGGTTCTGGACCAAACCCCCCAGATTAGCCGCAGTCAGTCAGCGGCATACTATCCTGTCTCCAAGCATGAACTTGAGAGAGCAGTGGCCGCCTCTGCTCTGCCACCTTGCCAACTGGGCTCTCCGGAGATCCCCCACCTAGTACGCAGACCTATCAGTGCCAATACAAGTGACCTAAAGCAGCACGTACCGACCCCCAGACCACTGATCCACTCCCAGAGCGTAAATCTTCGCTTCTCCCCGTCTAGCAGTAATATCTCCTCAGGCTCCAGCTGCAATATAGGCCCTGGCTTCAGGCCCTCCTCCTCCATGGCCCAAATGGAAATCCCGTTACAGACCACATATGAGCGAAGCTTTGATGAGCCATCTGCCCTCTCACCCTCTCAGAGCGGACTCTACTCGGGCGAACCCGCCCGATCCCGGACCACTCCGTTTATGGGCGTCATCGACAAGACCGCAAGGACTCAGCAACAGTACCTTCACCAGCCTTCCCGGGCCTGGCCCGTTTCATCCCTGGAATCGGTAATCACTAGCCCCACGTCGCCTGGCAACTTGATCCACCAAGCCTCCACCGCCTCTTCCTACAGCCCACCTACATCTCTAGGCAATATTGCCTACTACAATAAGACCAATAATGCCCAGAATGGACACATGCTAGAGGATGAGTACTACGTCCAGCCGCAGCCCTCCTCCCTGGGCAAGCTTGCTAACGGAGGGGCCCGTGATCGAGACCTCCTGGAGCGGGTGAGCCAGGTGCCGACTTACCAGGATGTTAAAGTGGCACGGACAATGCCCGTGGCGCAGGCCTACCAGGAGAACATGTACCGCCAGCTTTCCCGTGATGCCAGACAAGGTCCCACCTCGCCCATCAAACCAAAGAGACCCTTTGTGGAGTCAAACGTT

Function

symbol description
tanc2 Predicted to be involved in dense core granule cytoskeletal transport; regulation of dendritic spine development; and regulation of dendritic spine morphogenesis. Predicted to act upstream of or within in utero embryonic development. Located in dendritic spine.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04613815_04652751.mRNA True 5046 mRNA 0.55 21 4613815 4652751

Neighbor

gene id symbol gene type direction distance location
CI01000047_04596548_04605172 LSM12A, LSM12, LSM12B coding downstream 8643 4595980 ~ 4605172 (-)
CI01000047_04589853_04594533 NA coding downstream 19179 4589770 ~ 4594636 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 coding downstream 37478 4574335 ~ 4576342 (-)
CI01000047_04555399_04568166 NA coding downstream 45495 4554822 ~ 4568320 (-)
CI01000047_04479638_04501854 NA coding downstream 111842 4479241 ~ 4501973 (-)
CI01000047_04703391_04706693 NA coding upstream 50287 4703038 ~ 4706693 (-)
CI01000047_04790377_04795864 CNTD1 coding upstream 137473 4790224 ~ 4796316 (-)
CI01000047_04840115_04844233 SOX8, SOX8A coding upstream 186812 4839563 ~ 4844233 (-)
CI01000047_05108733_05109209 MED9 coding upstream 455253 5108004 ~ 5109256 (-)
CI01000047_05151314_05157285 NT5M coding upstream 496968 5149719 ~ 5158394 (-)
G203221 NA non-coding downstream 63558 4550020 ~ 4550257 (-)
G203219 NA non-coding downstream 67599 4545569 ~ 4546216 (-)
G203217 NA non-coding downstream 77245 4536341 ~ 4536570 (-)
G203204 NA non-coding downstream 111293 4502205 ~ 4502522 (-)
G203191 NA non-coding downstream 188456 4420159 ~ 4425359 (-)
G203258 NA non-coding upstream 149146 4801897 ~ 4802226 (-)
G203298 NA non-coding upstream 229902 4882653 ~ 4882903 (-)
G203323 NA non-coding upstream 282755 4935506 ~ 4948267 (-)
G203303 NA non-coding upstream 321545 4974296 ~ 4978735 (-)
G203355 NA non-coding upstream 336406 4989157 ~ 4989456 (-)
CI01000047_04285605_04286644 COA3A other downstream 327134 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 399385 4213409 ~ 4214085 (-)
G202944 NA other downstream 627413 3985342 ~ 3986402 (-)
G202733 NA other downstream 1480163 3132313 ~ 3133652 (-)
G203286 NA other upstream 221628 4874379 ~ 4876734 (-)
G203840 NA other upstream 1265757 5918508 ~ 5927344 (-)
G203881 NA other upstream 1390502 6043253 ~ 6043789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016865 NA coding CM030122.1 CM030122.1 32810085 ~ 32856301 (+)