CI01000047_04840115_04844233 (SOX8, SOX8A)


Basic Information

Item Value
gene id CI01000047_04840115_04844233
gene name SOX8, SOX8A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4839563 ~ 4844233 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04840115_04844233.mRNA
ATGTCCAAGGAGCCGGATAAAACTAGTTCTGGGACAGAAAGCTCTTTTATCGGCGATGCAGACTCTGATTCACCGTCCTCTCCATCAGTGTCCGACGAACAAGGGTCGCAAACCGGCACCGGCAACCGGGCAGACAGCGAGGAAGACGCCCGTTTCCCCCCGTGCATCCGAGATGCCGTGTCGCAGGTTCTCAAAGGCTACGACTGGTCCCTGGTGCCGATGCCTATGCAGGGTAGCAGGTCTTTGAAAGACAAGCCTCACGTGAAGAGACCCATGAACGCGTTTATGGTGTGGGCGCAGGCTGCGCGCAGGAAGCTGGCGGATCAGTACCCGCATCTGCACAACGCCGAGCTCAGCAAGACCCTGGGCAAGTTATGGAGGCTGCTTTCTGAGAGCGAGAAGAAGCCGTTTGTGGAAGAGGCAGAGAGACTGCGACTCCAGCACAAGAAAGACTATCCGGATTATAAGTACCAGCCACGGAGACGGAAGAGCCTGAAGCCGGGTCAGAGTGAACTGGACGCGGGAGCTGAGAAGATCCATCATCCCTCGGATCAAATGTACAAGACGGAAGCGGGAATGAGAGGGATGCACAATCAACCGGTCCATGGTGTTCAAGCACACGGCCCTCCAACGCCTCCAACCACCCCGAAGTCCGATCAGCATCAAAGCGCGAAGCGTGCCACGGAAAACGCAAGACAGAACATCGACTTTAGCAACGTGGACATAACGGAGCTCAGCAGCGACGTCATCGGCAGCATGGGCCCGTTCGACGTGCGTGAGTTCGACCAGTACCTGCCGTTAAACGGCCACATCGAGAACAACGGCGGGCAGCACTCCAGCCCCGGCTGTTTCAGCGCGTCCTATCACCATCACGGCAGCGTTTCGGCATGGAACAAGGCGTCCGGGTCACCGTCCACATCCTCGCATAACCAGTCGAGCCAACAAAGGCCGCTCATTAAAACAGAACAATTGAGTCCTTCTCATTACGCAGAGTCTCACGGGTCGCCGACCCAATCTGAACTGAGTGACTGTCCTGACATGCAGAACTCGACGTACTTCACCACATTTTCTGGGTATCCCGCTGGCATTTATCAATATCCGTACTTCCATTCCTCCAGAAGATCATATGTGACTCCTGTTCTCAACAGTTTGTCCAGTCCGTCTCATAGTCCCGGTGCAAACTGGGAGCAACCGGTTTACACGACTTTAACGCGCCCCTGATGCCATCATGAGAATTATGGGACTATGTGGTGTATGAAGACATTTGCTGATACTTTAAGATGTTTTATCTTGCCATTTCTGGTAATTTTGACCTTTAGATTTTCTGGAAACACTTTACAAAGGTCTCATTTGTTAACATTAGTTAATGCATTAGCTAACATCTTTGTTAAATTTAGTTAGTAAAATCGAATTGTTCATTGTTTGTTCGTGTTAGTTCACAGTGCATTAACAAATGTTAACAAATACAACTTTAGATTTTAAATCACCAGTGACTAATGCTTTAGAAGTATTTTCATTGTCAGTTCATGTTAACTAATGTAGTTAACTAATGTTAACAAATGCAACCTTATTGTAAAGTGTTACTGATTTTCCTAACGATTTTTGGGCTCACTTTTCAATATTGAATGTTTTGTGTTTATACTATGGTCCGGATAAAAGTGTTTTTGTTTTGTTTTTTGGGGGGGGAGTGAGACGCAATAGACTGATTTCTCTCGTCAATATTCAGTACGCTATTTAAATGCAATCATGTCTTTTTTGCTAAATGCAATTAAA

Function

symbol description
sox8a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in morphogenesis of an epithelium; negative regulation of transcription by RNA polymerase II; and neural crest cell development. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SOX8 (SRY-box transcription factor 8).
sox8 Enables sequence-specific double-stranded DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleus.

NR:

description
transcription factor Sox8a

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04840115_04844233.mRNA True 1773 mRNA 0.48 3 4839563 4844233

Neighbor

gene id symbol gene type direction distance location
CI01000047_04790377_04795864 CNTD1 coding downstream 43247 4790224 ~ 4796316 (-)
CI01000047_04703391_04706693 NA coding downstream 132870 4703038 ~ 4706693 (-)
CI01000047_04613815_04652751 TANC2 coding downstream 186812 4613815 ~ 4652751 (-)
CI01000047_04596548_04605172 LSM12A, LSM12, LSM12B coding downstream 234391 4595980 ~ 4605172 (-)
CI01000047_04589853_04594533 NA coding downstream 244927 4589770 ~ 4594636 (-)
CI01000047_05108733_05109209 MED9 coding upstream 263771 5108004 ~ 5109256 (-)
CI01000047_05151314_05157285 NT5M coding upstream 305486 5149719 ~ 5158394 (-)
CI01000047_05219313_05222967 NA coding upstream 374957 5219190 ~ 5222990 (-)
CI01000047_05235089_05236228 SSTR2A coding upstream 389911 5234144 ~ 5236273 (-)
CI01000047_05247473_05248489 SSTR5 coding upstream 402730 5246963 ~ 5248681 (-)
G203258 NA non-coding downstream 37337 4801897 ~ 4802226 (-)
G203221 NA non-coding downstream 289306 4550020 ~ 4550257 (-)
G203219 NA non-coding downstream 293347 4545569 ~ 4546216 (-)
G203217 NA non-coding downstream 302993 4536341 ~ 4536570 (-)
G203204 NA non-coding downstream 337041 4502205 ~ 4502522 (-)
G203298 NA non-coding upstream 38420 4882653 ~ 4882903 (-)
G203323 NA non-coding upstream 91273 4935506 ~ 4948267 (-)
G203303 NA non-coding upstream 130063 4974296 ~ 4978735 (-)
G203355 NA non-coding upstream 144924 4989157 ~ 4989456 (-)
G203356 NA non-coding upstream 146527 4990760 ~ 4990990 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 262598 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 552882 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 625133 4213409 ~ 4214085 (-)
G202944 NA other downstream 853161 3985342 ~ 3986402 (-)
G202733 NA other downstream 1705911 3132313 ~ 3133652 (-)
G203286 NA other upstream 30146 4874379 ~ 4876734 (-)
G203840 NA other upstream 1074275 5918508 ~ 5927344 (-)
G203881 NA other upstream 1199020 6043253 ~ 6043789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005057 NA non-coding NC_007123.7 CM002896.2 1072485 ~ 1085227 (-)
bowfin (Amia calva) AMCG00018263 NA coding CM030135.1 CM030135.1 5881546 ~ 5886000 (-)