CI01000047_05108733_05109209 (MED9)


Basic Information

Item Value
gene id CI01000047_05108733_05109209
gene name MED9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5108004 ~ 5109256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_05108733_05109209.mRNA
AGAGACGCAGACGCACGTTGATGACGTACCAACCTCTCAGCGCAAACATGGCGACTACGGTACCGGTGGTAGAGGAGGCTGAAGATTATTCCTTTTTACCCATTATTCACGATGTAATAAAATGCATGGATAAGGAAAGTCCAGACGTACATCAGGAGCTGAACAAACTGAAGACGAAGATTCAGGAGGCTCGGGAGCAGATTTCAGCCATGCCGGGGATCGACATGAGTCCTGCGCTGCAGGAGAACAAACTGCAGACCCTCAGAGAGCAGGTCCGGACCAAGAACCAGCTTTTGCAGAAATACAAAAGCCTGTGCATGTTTGACATCCCCAAACCTTCATGAGAGAACGCATGAATGAAAACACGAACACTTGTTTACACCGGAAGAGGCGACACTGATTCAGCCACATGTTTTTTTTATTAGGCTATTTGTAATTTTTGTATATATATATTTTTTGTTTTTACTTTGTGCATAGCATTTGCAACATCATGTGTTTTGTGCCGGTGAATGGTTACTGTGTACTTCACCTTTGTCAGTTTGTGCATTAAACTCAGTCACTTATTCAATAGAGGTTTTTATTTGCACTTAAAAATGAAACCATATATTTACCAGACCTGAGACAATATTGTGGTCTTACTTAAACCGGATAAATGACTGAAATAACAAGCAATTTTGCTTGAAATCAACATAAGACAATTTTTAGAAGGTATAAATTCTGCATTTTTAAAGAATGCATCTGGAATATTTATACACAAGATGAGCTTTAACGGCAAGTTTAGATAAAACATTTGTTATAATTATTTATTTTTTAAAATATACTCAGATACAGTATTGGGGCCTCATTTCAAGCCATAATGCATTAGTTAATTACAAGCTGTGCTTGCTTGGTGTCAAGTGTGCTCAACATACAAATGACAATTGTTTGAGCATCATAGAAGGGATTTTGAGAAAATTCTGCCTTTTTTAAAGAATATGTCTGGAATATTTATCCTCAATGGACTTGCAGCAGGTAGATGAAATTATATTTTAATGTGCTCATATTGAGGCCTAATTTCAAGCAAGATGAATAAA

Function

symbol description
med9 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex.

GO:      GO:0001104, GO:0016592, GO:0006357

KEGG:

id description
K15149 MED9; mediator of RNA polymerase II transcription subunit 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_05108733_05109209.mRNA True 1073 mRNA 0.37 2 5108004 5109256

Neighbor

gene id symbol gene type direction distance location
CI01000047_04840115_04844233 SOX8, SOX8A coding downstream 263771 4839563 ~ 4844233 (-)
CI01000047_04790377_04795864 CNTD1 coding downstream 311688 4790224 ~ 4796316 (-)
CI01000047_04703391_04706693 NA coding downstream 401311 4703038 ~ 4706693 (-)
CI01000047_04613815_04652751 TANC2 coding downstream 455253 4613815 ~ 4652751 (-)
CI01000047_04596548_04605172 LSM12A, LSM12, LSM12B coding downstream 502832 4595980 ~ 4605172 (-)
CI01000047_05151314_05157285 NT5M coding upstream 40463 5149719 ~ 5158394 (-)
CI01000047_05219313_05222967 NA coding upstream 109934 5219190 ~ 5222990 (-)
CI01000047_05235089_05236228 SSTR2A coding upstream 124888 5234144 ~ 5236273 (-)
CI01000047_05247473_05248489 SSTR5 coding upstream 137707 5246963 ~ 5248681 (-)
CI01000047_05546059_05547988 SOX9A coding upstream 435525 5544781 ~ 5548356 (-)
G203442 NA non-coding downstream 8292 5099498 ~ 5099712 (-)
G203437 NA non-coding downstream 11323 5096086 ~ 5096681 (-)
G203359 NA non-coding downstream 103027 5004472 ~ 5004977 (-)
G203356 NA non-coding downstream 117014 4990760 ~ 4990990 (-)
G203355 NA non-coding downstream 118548 4989157 ~ 4989456 (-)
G203446 NA non-coding upstream 3110 5112366 ~ 5113194 (-)
G203429 NA non-coding upstream 12670 5121926 ~ 5164869 (-)
G203516 NA non-coding upstream 186214 5295470 ~ 5317664 (-)
G203417 NA non-coding upstream 277836 5387092 ~ 5388043 (-)
G203574 NA non-coding upstream 281466 5390722 ~ 5391012 (-)
G203286 NA other downstream 231270 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 531039 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 821323 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 893574 4213409 ~ 4214085 (-)
G202944 NA other downstream 1121602 3985342 ~ 3986402 (-)
G203840 NA other upstream 809252 5918508 ~ 5927344 (-)
G203881 NA other upstream 933997 6043253 ~ 6043789 (-)

Expression


Co-expression Network