CI01000047_05151314_05157285 (NT5M)


Basic Information

Item Value
gene id CI01000047_05151314_05157285
gene name NT5M
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5149719 ~ 5158394 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_05151314_05157285.mRNA
ATCCTTGTTTCCAGAAGTATAGGGATTTTTTAAAAGTCTTTGTTATATAGTAATAAGCCATGAACCAAACCAACCAGCTACGAGATGAATTACAAACTTTGATTTGAAAAAAAAAAAAAAAAAAAAATGATATAACGGCTTTAATGAGGGAAAGAACTACAATCCCATGAAGCACTGCACATGACGTAATGAATTTGATGAATGTATATAAAACTATTCATTTAAATGTGTTGACTATGTATATAAAAACAGTGTATTTTACGTTTATTACAAAATGTAGAAATATTTAAGCAGTTTCACTGCTTCATGGAAGCACGCGGCTTGATTATTTCGATTCCCTGATGGTGATTTTTTTTTTTTTTTGCGGAATCATGGGTAATGTAGTCCTTCAGCAGAAATTCCCTGTTAAACATTATTAAAAAAAAAATATGTATAAGTTGAAATAATTGCGGGCTGACAGATACCATAAATTAAAAACCTCGTAGCTCACAGTAGGTCTTTCTCTAACGGTTTATAAGTTTTCGTTAAAAAAAAAAAAATCACTTCCGGAACCCGACTGCGAGATCTCTCTTTTCTCGAATAGCTTCGGTTTGCTCCGTGACAGTGTAGCGCAAAAATAGCCACTAGTTTTGAGCATGATTTTGAAGATGTAAACAAAGTGCTCAGATTTAAACGACACACAGTACTGTATCAATAATGTGCTTCATTTCGCAAACACTTCTCGTTTGACTTTAGCTGCAAGCGTGCAGAGATTTGCACAGCTGTAAACAAATGCAGATACGGGAGGTCAACACTGCAATTCAACACCAGCGACCACTGGAAAAACATGAGACCCTCTGACCCCTCAGAACTAACAAAAGACTCCGCAACAAAGTCACACAAACGCGTTTACAATGTGCAAAACAATAGAGAGCCAGCAGAATGAGATGTGCTAACAATCAGCATCACTCTGCTGCAAAATAGCATTCGAGTTAATGCACACTGCCAAGTGACTACGTTGGATTTAGACGATTATAAGGAGGTTTATGATGACTTTATTGCCGAGGATCGTACGGTGGCTCGAGAGAGGCTCTTCCTCATTGCACTTTCACTATCAAAGCAGCGCAAACATGTGTACGAATAACAGAAGACTGCGAGTTCTGGTGGACATGGACGGTGTCATCGCGGACTTCGAGGGAGGATTTTTAAAGAAGTTTAAGGCGAGGTATCCGAACGAGCCCTTTATATCCTTAGAGGACAGAAGAGGATTCTGGGTGTCCACACAGTATGGAGACATGAGAAGTGACCTGTGTGACAAGGCCATCAGCATTTGGGAGTCAAAAAACTTCTTCATGGACCTGGAGCCTCTTCCTGGAGGTGTGGAGGCGGTGAAAGAGATGTCCAAGATGGAGAATACAGATGTCTTCATTTGCACCAGTCCAATAAAGCATTACAGCTACTGCCCGTATGAAAAGTATGCATGGATAGAGAAACATCTGGGCCCTGAGTTCCTGGAGCAGATCATCCTGACCAGAGACAAGACCATAGTGACCGGAGACATCCTCATAGACGACAAACCTGATATCCTGGGTGTGGAGCCCAATCCCTCCTGGGAACACGTCCTCTTCACTGCCTGCCACAACAAGCACCTGCCAGCAAACCCCTCGCAGCGGCGGCTGCTGTCCTGGGCCGATGACTGGAGGACGTTGCTGGCCAGCAAACGCCAGTGAGAGATGACAGAACATCCCATCGTACGGCAGGGAAAAGAGCTGATTTGTGCTTTGATGGGTAAACAGTTCCTGTATCAGCCCTCATATTCAGTATTACTCTGTAAAAGCGTTGATTGATTTTGCAGGCGACGAGAAACAAACTGTTTTTTATGTAAAATCGCAAAACGGATTCAGTTTTTCATGCAAGACTTTTAGCATCAGTTTATTGTTCATTATGCATCCACTGAGGGCTCAGAAATTCATCGTTTACATCAAGCATAAACTGCCTTTCTTCACAAAGGGGATTGATCTACAAGAAAGAGAGAATATTTAAATACGATTTCCGCTCCTGTCTGATCGCACATATGCACATGCGAACATAACACTCTGAAAAATGCTGGGTTGCTTGCTTGGTTGGGTTGAAAATGGACAAACCCTGCAAATGGGTTGTTTTCACCCACCGATAGGCTTGTTTTAACCCAGCGGTTGGGTTAAATGTTTACCCAACCTGCTGGGTAGTTTTATTTTACTGTATTGCTTGCTTAAAATGAACCCAAAACATGTTGGAAATGAACATTTATTAATAAGTTTATAAATAATAATTTAATTGACTATTAATAAATGTTCAACTTTTGATTATTATTGTTGCCTCTAGTAATTATGGGTCTGATTTTTAATTTCCAACCTATTTTGGGTTCATTTTAAGCCAGACATACAGTAATTTTTAAACAATAGTTGAGTTAAATAAAATTGCCCAGCAGGTTGAGCAAACATTTAAACCAATCGCTGGGTTCAAACAACCCAGTTGCTGGGTTAAAAACAAGCCAAGTTGGGTTGAAAATGGACAAACCCAGCGATTGGGTTGTTTTAACCCAGCGAAATGAACCCAAAAAATGTTGGAAATTAACGTTTATTAATATGTTTAATAAATGAACATTTATTATTACGTTTAATGAATAATAATTAAACAATAAACATTCATTAAATTGGTTATTAATAAATGTTCACCTTTTGATTATTATTGTTGCCTTTAGTAATTATGTGTCTGATTTTTCATTTCCAACATATTTTGGGTTCATTTTAAGTCAGCCATACAGTAATTTTTTAACAATAGTTGGGTTAAATAAAATTGCCCAGCATGCTGGGCAAACATTTAACCCAACCGCTTGGTTGAAACAACCCAATCGCTGGGTTAAAACTACCCATTTGTTGAGTTAAAAAAAAAACAACCCAACTGCTGGTTTTGTCCATGTTCAACCCAGCATTTTTTAGAGTGAAGCATGTAATGATTTTTCACTGGTTCACTGTTAACATGAATGCATATTTAATTTATTATGAAGTATAGTTTAAATTCAGGGAGAACACAATACTCGACAGAAGAAGACAGGTTTGTTTGTTTATCATTGTCATAGTCTATCTTTGTTGTGTGTCACTGGTTGAGGAGATGTGAATGCCAGAGCACTGCATGTACTGTAATCAGACTCTCTGACAGGTTATTACCACTCTTGACACTAGAGGTCACTATGAGCACATGGAGTTATTATAATGCCTGTGAAACATGTTGCTTTTTAATTTCGGTTAACTCTTTATTAGTTTGGAATGAATCTTTTAATAAA

Function

symbol description
nt5m Orthologous to human NT5M (5',3'-nucleotidase, mitochondrial).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_05151314_05157285.mRNA True 3304 mRNA 0.38 5 5149719 5158394

Neighbor

gene id symbol gene type direction distance location
CI01000047_05108733_05109209 MED9 coding downstream 40463 5108004 ~ 5109256 (-)
CI01000047_04840115_04844233 SOX8, SOX8A coding downstream 305486 4839563 ~ 4844233 (-)
CI01000047_04790377_04795864 CNTD1 coding downstream 353403 4790224 ~ 4796316 (-)
CI01000047_04703391_04706693 NA coding downstream 443026 4703038 ~ 4706693 (-)
CI01000047_04613815_04652751 TANC2 coding downstream 496968 4613815 ~ 4652751 (-)
CI01000047_05219313_05222967 NA coding upstream 60796 5219190 ~ 5222990 (-)
CI01000047_05235089_05236228 SSTR2A coding upstream 75750 5234144 ~ 5236273 (-)
CI01000047_05247473_05248489 SSTR5 coding upstream 88569 5246963 ~ 5248681 (-)
CI01000047_05546059_05547988 SOX9A coding upstream 386387 5544781 ~ 5548356 (-)
CI01000047_05805272_05807974 NA coding upstream 646878 5805272 ~ 5807974 (-)
G203446 NA non-coding downstream 36525 5112366 ~ 5113194 (-)
G203442 NA non-coding downstream 50007 5099498 ~ 5099712 (-)
G203437 NA non-coding downstream 53038 5096086 ~ 5096681 (-)
G203359 NA non-coding downstream 144742 5004472 ~ 5004977 (-)
G203356 NA non-coding downstream 158729 4990760 ~ 4990990 (-)
G203516 NA non-coding upstream 137076 5295470 ~ 5317664 (-)
G203417 NA non-coding upstream 228698 5387092 ~ 5388043 (-)
G203574 NA non-coding upstream 232328 5390722 ~ 5391012 (-)
G203576 NA non-coding upstream 234704 5393098 ~ 5393337 (-)
G203709 NA non-coding upstream 480049 5638443 ~ 5638653 (-)
G203286 NA other downstream 272985 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 572754 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 863038 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 935289 4213409 ~ 4214085 (-)
G202944 NA other downstream 1163317 3985342 ~ 3986402 (-)
G203840 NA other upstream 760114 5918508 ~ 5927344 (-)
G203881 NA other upstream 884859 6043253 ~ 6043789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G38052 nt5m,LOC107719901 non-coding NC_035900.1 CM008303.1 20804055 ~ 20811142 (-)