XLOC_009448 (si:dkey-24p1.1)


Basic Information

Item Value
gene id XLOC_009448
gene name si:dkey-24p1.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 38101135 ~ 38129845 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018560
AGACACAATAATGGCTCCTGCAGGGATTCCTCTGCTTCTGTTTGTTGTTCTTGTGGACTCCTACACTGGCTCAACTAAAGCCAGAATAACTGTGTCTGaagaaacaaaaataactaacgaAGGGTCGTGTGTGACAATACCCTGTTTTTACGACATACCAGAGGACAAAACACTTGATCTTCTGTGGTTTAAAGATTCACAGTATGATCATGACTCACGCATGTTTATTGGGACCATTGTATACAGTAACACAGGTAAACGACCTCAATCACCAGGTTACTCTGGCAGAGTGGAATACATAACCAATATAAAATCCAAGACGCAACATGGACAACAAACCATCAATGAAATGCAATGTGATTTAAGAATCACAGATCTTCAGAAAACAGACAGTGGGAACTACAGCTTTAGGTATATTGGTCCAGATCCACACATATTCATGAGTAAAGCGATGAATCTTACAGTTACAGACAATCCTTGTAAGGTTTACATTGAACCATCAGAACTGAAGAATCCACTAAAAGAGTCAGATAAATTTACCGTTCAATGTTTCACATCTGGTCCCTGTGATTCTCCTCCTGAGTGGCTCCTCTTTAAATCAGGACAAACACCAGAATGGACGTCCTCCCCATCAAAAGAGATGATTATAGAGACTGAAAAGGGAGAAAATGGCACACAGGTCACAAAACTGAAGCTCACTGTGACATGGAAGGATGACAATAGGATTCTGTCCTGCCGTCCAGCAAACAGTGACGACAGCTGCCAGATTAGGAATATCACCCTGTCTGTGGAATATTCACCTAAAGAGACACATGCATCAGTGAGTTCTAATGATGTAAAGGAGACAAATTCTGTCACTCTCTCCTGCACCAGCAGAGGTCGCCCTGAAGTCACCTacacatggtttaaaaaaaacaaaggaaagcTTCAACAAATATCTGATTTGGATCTACGTCAGATGAAACCAGAAGATAGCGGAGAATATTACTGTGAAGCAAAAAACTCACTTGGAGTCATGAAATCAAATGAAATTTCCATCAATGTAAAGTTTGGTCCAAAAGGTGTCACTGTGACACCTCCTTACAACATCAATGATATCAAAGAGGGAGACACAGTGACACTGAAATGTTCAGTAGAGCGACAAAATCCACCAGCCTCTAGGTTTGTGTGGTATAAAAATAACCGAATACAGCAGGAAACCAGTGAGACGTTCATCGACAGAAAAGTAACTGCAGCAGTACAAAAGTATAAATGTGAGGCTAATAATGGGATAAATAAAGGACAATCACAAGAACTCACAGTCAATGTAAAGTATTCACCAAGGAACATAAATATCCAGGGGAAAACATCTGTAAAAGTGGGTAGTAGACTGGAGTTGACATGCTCAGCTGATGCCCATCCACAGCCAGTCTACAAGTGGACATTTCCACCTGGACTGTCTTTTTCACCATTATCAAAAGGGAAATTAGAAACTCAGCCAGTGACCATAGAGCATGCAGGAGAGTACACATGTGGTGTCACAAATACTATTGGAACAAAATCAGAGAGTACTAATGTTAAAGTGCTTTATCCTCCACGTAATATCAATTTGATGATGCAGAGTGAAGTGAGAGAGTTTGAAGTGATCTCCGTTATCTGCACAGTTCAAAGTTTTCCCACGTCAAAGTTCACAGTTACAAAAAATCTGGATAATCTGCTAAACATCCCAGAGTGTCGCAGGAACAGCACTGAATATGAAAACAAGGTAATTATCTTCCTGAATGTAACAGAGTCGGATGCCGGAACATACAAGTGCACAGCAAAAAATACAGAGGGACAAGAAGAAACTAATAAGAAACTTACTGTGCTGTATGCTCCTAAAAATGTAACAGCAAGTTTTAAAGGAGATCAGAAATCTGCGAGTGAACTGACTCTTACATGTGAGGCTTGCTCCAATCCTCCTGTTTCCTCATACGAGTGGACGAAACTCAACAATGGACAGTTCGAGACACttaaacaacatcaacaactcCACTTTAATTCTCTGGAAATCTCTGACTCTGGACAGTATGTCTGTATTGCTTATAATGCTATTGGAAAAGCAAAGTCACCACCACTGGACATCAGAGTTAAATATACACCAAATATCACGATTGTTCATAACACGACCACCTCAGCTCAATGGAATCTCCCAGTGTATCTGAGCTGCATTGCAGACGCGCATCCTCCTGCCACTGAATATAAATGGTACAGACAGGAGGACAACACCACTGTCTTATCACAGCAGCAGAACTTCACGGTTCTTCCTCAAAACCCAGGATTGTATTACTGTACGGCGACAAATGACATCGGACTATCCCGGTCCAAGCAGATCGCCTTATTTGTCAGTACCTCTCTTAGTGTGTTTTTGAAGATTGTCTTACCTATCATTTTCCTATTGGTTCTCATCGTTGTGGTCATCTTTCTGATACGCAgaaacATCATCAAGATAAGATCGGATCAGCAAAGTGGAGCAGATAATCTATTGTGTTTATTCCCAGCATTCCTGTCACGCTCCTCCAGAGtgcaaaacttatttttattgGGGTCTCGAAATAACACCCAGGAGAATTTGTCATTGGATGATCCAAACTATGCACAGGTTAATCTATCATACCCAATCCAGCCTTCCCAAAATCCAACACAAGGACAGGACCTTAATCCAAGACCAAAACCGAATATCCAGACAGTGTATGCTGCCATTAAACTGCCACAAAAGAAACAGAAAAGACATTcgccaaaacaacaacagaagaCTGGAAATATGGACAATACATCTATGAACTACGTCACTCTCGATTTCAAGGGACAAAATGAGCCAAGAAAAATAATGCCTGAAACTTCAGCAGTTTATGCCATGGTGTCAAGGAACAAGCAGGCAAAGAGTTCCCAGGCAGAAAATTCTGATTATGAGAATGTTTCTTCTGCATGTGCGCCAAAACTTCCACTTACAAATATGGAGTGGGAGTCTGATACCAGCGAAGAAGAAGAAGTGAATTACTCTACTGTCTCTTGTTCAACCAAACCTGCTGTTAAAGAGGTCAAACCCAACCAGAAGAGGCATTTTAGCAGTTCAAGCTCCGATGAAGATGACAGAACTGAATATTCAGACATTAAAACGTAAAGCAGAGTTTCCAGATCAAGTATTAAAACCTTAAGCTGTTTTGTTGCCACATGTTTATGATGTTTTAAAgtgataatttttaaaaacaaacaaacaaaaaaaaaacatgattttataaGTGATTTCTaagtttttcttttgtaaaataatacaatattgaaTTGTTCATGAGTTATGCttgatataaataataacatttgacAGTGTGTATCAATGTGGAATGTATTGTGTGATGCTTGCAAAGCTTCCATAACCTTTAATAAACATCTGCATTTGCCAATGTA

Function

symbol description
si:dkey-24p1.1 Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Orthologous to human CD22 (CD22 molecule).

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-631 Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Orthologous to human CD22 (CD22 molecule).

Ensembl:

ensembl_id ENSDARG00000039096

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018560 True 3426 mRNA 0.40 16 38101135 38129845

Neighbor

gene id symbol gene type direction distance location
XLOC_009447 si:dkey-238d18.6 coding downstream 91791 38008502 ~ 38009344 (-)
XLOC_009446 si:dkey-238d18.15 coding downstream 172000 37927949 ~ 37929135 (-)
XLOC_009445 si:dkey-238d18.5 coding downstream 179137 37891045 ~ 37921998 (-)
XLOC_009444 CR944667.3 coding downstream 220248 37876716 ~ 37880887 (-)
XLOC_009443 si:dkey-238d18.4 coding downstream 225534 37854483 ~ 37875601 (-)
XLOC_009449 irgq2 coding upstream 20620 38150465 ~ 38154616 (-)
XLOC_009450 si:dkey-24p1.7 coding upstream 27642 38157487 ~ 38177768 (-)
XLOC_009451 chrna10a coding upstream 50059 38179904 ~ 38193383 (-)
XLOC_009452 rhoga coding upstream 72119 38201964 ~ 38218320 (-)
XLOC_009453 NA coding upstream 166312 38296157 ~ 38297734 (-)
XLOC_009432 CR848836.1 non-coding downstream 371969 37727834 ~ 37729166 (-)
XLOC_009422 CR848749.2 non-coding downstream 836870 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 1226769 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 1316362 36784479 ~ 36784773 (-)
XLOC_009455 NA non-coding upstream 295703 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 417982 38547827 ~ 38550804 (-)
XLOC_009457 NA non-coding upstream 772088 38901933 ~ 38910271 (-)
XLOC_009458 NA non-coding upstream 818578 38948423 ~ 38952429 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_05506875_05515720 NA coding CI01000095 null 5506637 ~ 5516183 (+)