CI01000047_05219313_05222967


Basic Information

Item Value
gene id CI01000047_05219313_05222967
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5219190 ~ 5222990 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_05219313_05222967.mRNA
AGGTATTTGTCGGGGACTGAGTGATGGCACAACGCTGTGAAGAGGGCCAGCACTTGGACAGGCTGCTACGAAAGTGTGTGTCCTGCAACCTGGTCTGTCATGACCCTGTGATTCTGACACGCTGCTCTGAGTACTGCGTGGCCTGGAGATGTAAAGCCGTGTCTGGTCAGTTCTACGACCGCCTGCTGAAGAAGTGTCTGAAGTGCTCTGAGTTGTGTGGCAGTCACCCCTCGGCGTGCTCAGATGCATGCGGAGATGCAGTGCCAGTGGCCGTGACGCAGAGGCCTCTCGGCGTGTCTGCAGTACCGCTGATCACCAGCAGAGGGCGCGCAGTGCCCAGATCCTCGCTGTACTCGGAGGCGCTGCTGTACTCTCTGCTGGGTCTGTGCATCATAGTGCTCATGTTCACACTGACCGCTGCAATCCTGCTGCTGCTCAAGAGAGCCAAACACCAGCAGCAGCAGCTGGACACCAAGAAACAGCAGCCCAAAAGACAGGGACAATCATCTAAAGACGATGTGTCTCAGGAAGGCAGCGTGAATCAGGACAGGCCGAAGGCGACAGAAACCTGTGTCTATTGCTTCTCTGACCACACGGCGGCGCCACACGCGCTCTCTCAGCAGTCTGGAGCTCAGCAGGCCTCTCGCGCCGCAAACCCGTGCAACAACGGCCTGCTGCAACATCCACTTCATACACACCCCGACAAGAGCAGGCCGTTCAGGATTATATGTTCACCTACTCAAACAAGCATGTGAATACTAATGTCAGTGCTGAGGAATATAATGTATAAACGAGCGCATTTGCACATGTAACTGTACTGCACCTGTAATTCCTCCAGAATTCCTATGGAAAATCAATGTCATTTTAGTTTTAATAAA

Function

NR:

description
hypothetical protein cypCar_00048032

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_05219313_05222967.mRNA True 878 mRNA 0.54 4 5219190 5222990

Neighbor

gene id symbol gene type direction distance location
CI01000047_05151314_05157285 NT5M coding downstream 60796 5149719 ~ 5158394 (-)
CI01000047_05108733_05109209 MED9 coding downstream 109934 5108004 ~ 5109256 (-)
CI01000047_04840115_04844233 SOX8, SOX8A coding downstream 374957 4839563 ~ 4844233 (-)
CI01000047_04790377_04795864 CNTD1 coding downstream 422874 4790224 ~ 4796316 (-)
CI01000047_04703391_04706693 NA coding downstream 512497 4703038 ~ 4706693 (-)
CI01000047_05235089_05236228 SSTR2A coding upstream 11154 5234144 ~ 5236273 (-)
CI01000047_05247473_05248489 SSTR5 coding upstream 23973 5246963 ~ 5248681 (-)
CI01000047_05546059_05547988 SOX9A coding upstream 321791 5544781 ~ 5548356 (-)
CI01000047_05805272_05807974 NA coding upstream 582282 5805272 ~ 5807974 (-)
CI01000047_05862382_05868129 NA coding upstream 638835 5861825 ~ 5868679 (-)
G203429 NA non-coding downstream 54321 5121926 ~ 5164869 (-)
G203446 NA non-coding downstream 105996 5112366 ~ 5113194 (-)
G203442 NA non-coding downstream 119478 5099498 ~ 5099712 (-)
G203437 NA non-coding downstream 122509 5096086 ~ 5096681 (-)
G203359 NA non-coding downstream 214213 5004472 ~ 5004977 (-)
G203516 NA non-coding upstream 72480 5295470 ~ 5317664 (-)
G203417 NA non-coding upstream 164102 5387092 ~ 5388043 (-)
G203574 NA non-coding upstream 167732 5390722 ~ 5391012 (-)
G203576 NA non-coding upstream 170108 5393098 ~ 5393337 (-)
G203709 NA non-coding upstream 415453 5638443 ~ 5638653 (-)
G203286 NA other downstream 342456 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 642225 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 932509 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 1004760 4213409 ~ 4214085 (-)
G202944 NA other downstream 1232788 3985342 ~ 3986402 (-)
G203840 NA other upstream 695518 5918508 ~ 5927344 (-)
G203881 NA other upstream 820263 6043253 ~ 6043789 (-)

Expression


Co-expression Network