CI01000047_05235089_05236228 (SSTR2A)


Basic Information

Item Value
gene id CI01000047_05235089_05236228
gene name SSTR2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5234144 ~ 5236273 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_05235089_05236228.mRNA
ACTCTATCTTCATAAGCCTTTTCCCGGTGAATAAACACTGCCAAAATGGACACATGGACGTTTATGCCCAATTCCAACCTGTCCCTCCCTGACCGCTTGGTGAACAATAGTTTCTTCCCAGGGAACGAGTCTGACTTTGGTCTGGAGATTTACCCTCACAATACCACTAACCATGGCTTCGACCAAACAAGTTCAGTAGTCATCACATTTGTGTACTTTGTAGTCTGTGCGGTGGGACTCTGTGGGAACACGCTGGTCATTTATGTCATCCTGCGCTACGCCAAGATGAAGACCGTCACCAACATCTACATTTTGAACCTGGCAGTGGCGGATGTCCTGTGCATGCTGAGTCTGCCCTTCATTGCCATTCAGCTCTTGCTGCTCCACTGGCCCTTTGGATCCGCGATCTGCCGTGTTGTCCTAACCGTGGACTCCATGAACCAGTTCACCAGTATCTTCTTTCTAACGGTCATGAGCTTTGATCGCTACCTGGCCGTGGTGCATCCGATCAAATCCACCAAATGGCGAAAGCCACGCATGGCCAAAACCATCAGTCTGGCCATGTGGAGTGTCTCTCTGCTGGTCAACCTACCAATTATGATCTACAGCGGCGTGAACGCCAAAAGGAACGAGGCTCGGACGTGTACCATGTTGTGGCCAGAGCCCCAGAACACCTACTACACCGCTTTCATCTTCTACACCTTTTTCTTGGGCTTTTTCTTGCCGCTGATTGTCATCTCCATGTGCTACCTGCTCATCGTCATAAAGGTGAAATCCTCTGGCATGCGGGTGGGCTCCACCAAAAGAAAGCGCTCAGAGCGGAAAGTCACCCGCATGGTGTCTATCGTGGTGGTGGTGTTCGTGCTGTGCTGGTTACCTTTTTACGTATTCAACGTGACCTCTGTGACCGGAACCGTGCCCACCACACCTGTGCTGAAGAGCACGTTTGACTTCGTGGTGGTGCTGGGTTATGCCAACAGCTGCGCCAACCCCATCCTCTACGCCTTCTTGTCGGACAACTTCAAGAAGAGTTTCCAAAACGTCTTGTGTCTGAAAAGAGTCGGTGGCTTGGATGAGATCGACCGCAGCGACAGCCGTCAGGACAGGACTCGAATGGTCAACGACGTCATGACAGAAACGCAAAACGCCGCACTGCTCAATGGAAACCTTCAGACCAGCATCTGAAACAGCTGTTACATGAAATCTTAATTTTAAGACTGCCTGTCAGAAACTACATCTAGGTGTGCTAGGAAAGATTTAGTATTTAAGATCAACATTAAGTATCAAAGTTTATCTGGCCATTTTTAGGACATCCGCATGTCTTAAAGTGGTCCATTTGGGTGAGATCCTTTTGGAGAGCTTGATCTGATTGATCTCATGTATTTAAGCGATGAATGTCATTTACTGTAAATAACTCTAGTTGCTTTGTTTGGTGTTGCTCTCTGAATTATGAAGTTATTGTGTTTGTTATGTGTGTATGTTCACTTCAGTGCCAAAATTGTCTTTAAAGTTAAGAGACAAGTCTACCGCCAATTCAAGATCATGGCCCTCATTAGATAAACATAATTTCACTCTCTCACACCTTTTGTGGAAAGACAAGGCCAAATAGGACAAGCTTGTTAGAGGCTTCTTATTATTCAATGCTTTTTGTTATGATGAATGCAAGATGAGTGAGTGATGTTGTTATCCAGACTGAATATAAAAAGGTCTCCAAAATCTAACAAAAGTTGTACATTTCTGTGGCCTATTTATTTGTTGTTTATTTAGTGAATTATGCTTATGGTAATATCTTACCAAAACCTGATGGTTGCCATCTTGTTTACATTTACAAAATCTTCCCTCATCACATTTCGCCTCTGGTTCCCAGTAGAGTTTTATTTTGGTAGTGGAAATGTACATAATGTTCAGTGGAGAGGGGGAGGAGAAGGATGAGCACTGTTACAAAACTTAGTAAGCTGCCTACCTAATCAACAATTTCAGGCATCGTATATGCTGCTCCAAAAGGTGTAGGCAGCAACATTATGTTGCCTTTTAAGATACCTCCTTTTGGCAGCATTTATAGAGCATCATATGTATCCATCATGAAAAAGGCACAAAAAAAGCATCCAACATAGTTAAGTCTTAATTAAA

Function

symbol description
sstr2a Predicted to enable somatostatin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human SSTR2 (somatostatin receptor 2).

GO: NA

KEGG:

id description
K04218 SSTR2; somatostatin receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_05235089_05236228.mRNA True 2130 mRNA 0.44 1 5234144 5236273

Neighbor

gene id symbol gene type direction distance location
CI01000047_05219313_05222967 NA coding downstream 11154 5219190 ~ 5222990 (-)
CI01000047_05151314_05157285 NT5M coding downstream 75750 5149719 ~ 5158394 (-)
CI01000047_05108733_05109209 MED9 coding downstream 124888 5108004 ~ 5109256 (-)
CI01000047_04840115_04844233 SOX8, SOX8A coding downstream 389911 4839563 ~ 4844233 (-)
CI01000047_04790377_04795864 CNTD1 coding downstream 437828 4790224 ~ 4796316 (-)
CI01000047_05247473_05248489 SSTR5 coding upstream 10690 5246963 ~ 5248681 (-)
CI01000047_05546059_05547988 SOX9A coding upstream 308508 5544781 ~ 5548356 (-)
CI01000047_05805272_05807974 NA coding upstream 568999 5805272 ~ 5807974 (-)
CI01000047_05862382_05868129 NA coding upstream 625552 5861825 ~ 5868679 (-)
CI01000047_05869347_05869519 NA coding upstream 633011 5869284 ~ 5869519 (-)
G203429 NA non-coding downstream 69275 5121926 ~ 5164869 (-)
G203446 NA non-coding downstream 120950 5112366 ~ 5113194 (-)
G203442 NA non-coding downstream 134432 5099498 ~ 5099712 (-)
G203437 NA non-coding downstream 137463 5096086 ~ 5096681 (-)
G203359 NA non-coding downstream 229167 5004472 ~ 5004977 (-)
G203516 NA non-coding upstream 59197 5295470 ~ 5317664 (-)
G203417 NA non-coding upstream 150819 5387092 ~ 5388043 (-)
G203574 NA non-coding upstream 154449 5390722 ~ 5391012 (-)
G203576 NA non-coding upstream 156825 5393098 ~ 5393337 (-)
G203709 NA non-coding upstream 402170 5638443 ~ 5638653 (-)
G203286 NA other downstream 357410 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 657179 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 947463 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 1019714 4213409 ~ 4214085 (-)
G202944 NA other downstream 1247742 3985342 ~ 3986402 (-)
G203840 NA other upstream 682235 5918508 ~ 5927344 (-)
G203881 NA other upstream 806980 6043253 ~ 6043789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005064 sstr2a coding NC_007123.7 CM002896.2 1556147 ~ 1557286 (-)