CI01000047_05380032_05387598 (SLC39A11)


Basic Information

Item Value
gene id CI01000047_05380032_05387598
gene name SLC39A11
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5379365 ~ 5388252 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_05380032_05387598.mRNA
ATATAAAACAATCGGACCGAACAATGAGTTTGCGCGCACTTGCACGTACTTGACTTAATTTTCTGTTAAATTAAAAAAGGCTTAAATTCTTGAATATTTAATGCTTACTTTTTTAATATATATTGTAGACAGAAATGAAACATAGCTTTGAGCCACTAGAACACGAGTTGATCGAATGTGGAAAAACATGCAGTTAAGGGTGTCTTATAAAATGTTTTTAGGTACACTTTTCCCACAGTCGTCCTCTGTGAGTGAAAAGCAGTGGGTATACGGTGGGTACTGAGGTCAAAGGTCACTGGAAAGCCATAGTGATTGGTGCAGATGGTTTTGGGGATTTTCCCTCATTTCTCCCAGATCCCCATGCTCTTCCCAACACACAGATGCCCATTCAGGGCAGACCCCCATGGATGGAGGGGGGCACCAAAGGCCCTTTGTGCCCAGAGAGGAGCTCTGTGGTCAGACACTGGACCCACTGTCTTCCCTTCTCAATGGAGGCTTCTTCATGCTTTTGCAATAATGTTGGAATGTTTCCCTTTATGTTTTTTGGGGGGTTTGTTTTAATACAGCCGTCTGAACCAACACACAGTGTATCACAAATCCCACATCCTTCCTTCATTTTAATTTACTTTCAAGCTTGTATACTAAGCTAAGAAAGTGAAGTGTTGGAATGGCATTGTACGTTTTGAGATCTCCACCCTATTTTACTGCCGAGAGCTTGCGGTTACTGAAGCCTGTCCTCAGAGTAAGCCTTCATCTGATTCACACGGAGAGCCTTAGTCAACAGTCGATTCTCAGCCCTGGCACACTCCACGCTGTGAAATCTCTCGCTGAGATAATGTGTGAACTTAAGAGAGTTGAAAAGTTACAGAGTGTCAAAACCACTTGGAACCAGTGTGCCTCAATGCAACACCAGATCTGCATGTGCTCTCTGTTGAGAACTGATTTAGCGATAATGTCTGTTTCTTTCAGAAATTTGGCCATAGGCATTGGCATTCAGAATTTTCCAGAAGGCCTTGCAGTGAGTCTCCCATTGCGGGGTTCTGGGATGTCCACATGGCGATCCTTTTGGTACGGACAGCTGAGCGGGATGGTCGAGCCTCTGGCTGGGTTGTTAGGGGCCGTTGCCGTGGTGCTGGCGGAGCCGTTGCTACCGTACGCTCTCGCCTTCGCCGCAGGAGCCATGGTGTATGTGGTGGTCGATGACATCATTCCTGAAGCTCAAGTCAGTGGGAATGGTAAGCTGGCCTCGTGGACATCCATTCTTGGCTTCGTCGTGATGATGTCATTGGATGTGGGTCTTGGCTGAGGCTTTTCATTGGTCGAATCTTTGAATGTCACCTGACTGCACTGAAAGAAGCGACCAAAGCAGCCTTTTTTTGGTGTATACTGTAGGTTTATTATCCGATGGAATATTTTTCTACGTATTTTATGTAATTTTTATTTGTTTTATGAATGACTCGCGGACCACATTCGTTTAGACGGCAAAAAAGGATTGATTGCAAAATACTTGAATAATTATTAAAACTTGAATGATTTACATAAGGGGTTGTTTAGGTGTGTGTGTATTTCTGTGCACATGAGAGCTTCCCATCAGTAATATAAGGACCATAAGCTCTCAGTATAGTCGTGTCTCATTTGAATGAAAAGCGATGATGACTCTGTTCATTACCGTCTTGAGTAATCCAATGTTTTAAGCTAGTCTTTCCAGTCAGCCAGTCACTTTCAAACTAAATGTTTAATTCAAAGTTTTCATTTTATGGCCTTTTTTTTTTTTTTTTTTTTTTTGGGTTTCTGTTAATTATATATATTATATGCAACACAACTATGAATAGTAAGTTCATATGCAACACGTGTGAATGCTGATGTAAAATGATTACACTGTACAACCCGTTTGTGTTCATTTGTGTGTGAAATACATTGAACATTTTCGTTTTGTTGCTTAAATAAGGAGAAAGAAGTA

Function

symbol description
slc39a11 Predicted to enable zinc ion transmembrane transporter activity. Predicted to act upstream of or within zinc ion transport. Orthologous to human SLC39A11 (solute carrier family 39 member 11).

GO: NA

KEGG:

id description
K14717 SLC39A11, ZIP11; solute carrier family 39 (zinc transporter), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_05380032_05387598.mRNA True 1960 mRNA 0.42 4 5379365 5388252

Neighbor

gene id symbol gene type direction distance location
CI01000047_05339574_05340802 NA coding upstream 38493 5337685 ~ 5340872 (+)
CI01000047_05315990_05318854 NA coding upstream 58954 5315584 ~ 5320411 (+)
CI01000047_05267807_05269108 NA coding upstream 110215 5267807 ~ 5269150 (+)
CI01000047_05185698_05212150 USP22 coding upstream 167141 5185698 ~ 5212224 (+)
CI01000047_05159134_05162486 NA coding upstream 216770 5157205 ~ 5162595 (+)
CI01000047_05438344_05441756 NA coding downstream 47289 5435541 ~ 5442287 (+)
CI01000047_05468225_05478050 NA coding downstream 78837 5467089 ~ 5479506 (+)
CI01000047_05856549_05859800 NA coding downstream 467863 5856115 ~ 5859942 (+)
CI01000047_05887388_05899310 VSTM4B coding downstream 497970 5886222 ~ 5899612 (+)
CI01000047_05911739_05912506 LRRC18B, LRRC18 coding downstream 523387 5911639 ~ 5914944 (+)
G201869 NA non-coding upstream 259721 5119350 ~ 5119644 (+)
G201863 NA non-coding upstream 269163 5109988 ~ 5110202 (+)
G201848 NA non-coding upstream 270190 5108524 ~ 5109175 (+)
G201847 NA non-coding upstream 281384 5097585 ~ 5097981 (+)
G201856 NA non-coding upstream 306208 5072687 ~ 5073157 (+)
G201959 NA non-coding downstream 137550 5525802 ~ 5625106 (+)
G202021 NA non-coding downstream 243963 5632215 ~ 5632418 (+)
G202030 NA non-coding downstream 262114 5650366 ~ 5650573 (+)
G202033 NA non-coding downstream 266496 5654748 ~ 5655020 (+)
G201599 NA other upstream 896908 4415813 ~ 4482457 (+)
G201387 NA other upstream 1677505 3696516 ~ 3701860 (+)
G201186 NA other upstream 2291178 3018705 ~ 3088187 (+)
G200076 NA other upstream 2801368 2520596 ~ 2577997 (+)
G200003 NA other upstream 3060403 2316863 ~ 2318962 (+)
G202382 NA other downstream 1427465 6815717 ~ 6816118 (+)

Expression


Co-expression Network