CI01000047_05546059_05547988 (SOX9A)


Basic Information

Item Value
gene id CI01000047_05546059_05547988
gene name SOX9A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5544781 ~ 5548356 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_05546059_05547988.mRNA
AGCACTTTTTGAAACTAAGTTAAAACAGATTTCTCAAATGAAAATGTTAAATTGTGAGTGATAATTATTGAGAGTGAGAGAGGGGTGGGCAAGAGGAGGCATCGTTTTCCTTTTCGTCACAGCGCGTGCTGTTTAAAAGCTCGTGCGCGCTCAGCTGACAAACCAAAGTTCGTCCCTCTCTTGGAAATACTACACGGGAGCGCACAGGGAGCGCTTTGCTTTTGCAGACACCAGCAGAAACACTCTTAACGCTTGCCATCTGAAAGCGAGCAACACATTGGATTTGCAGGAATTAAAAAGTTGGAAAGTATTTTTTGGAGTCGCTGCTGCAACCGAATTCTCTGAGATCGTCCATCTACAGTCTTCGCATGAATCTACTAGATCCCTACCTGAAAATGACAGATGAGCAAGAGAAGTGTCTGTCTGATGCCCCCAGTCCGAGCATGTCCGAGGACTCCGCGGGCTCCCCCTGCCCGTCCGCCTCGGGCTCCGACACGGAGAACACCCGCCCGGCAGAGAACAGCCTGATGGCTCCGGACGGGACGCTCGGCGACTTCAGGAAGGACGAAGACGACAAGTTCCCGGTGTGCATCCGAGAGGCGGTGTCTCAGGTGCTGAAGGGCTACGACTGGACGCTCGTGCCCATGCCGGTGAGAGTGAACGGCTCGAGCAAAAACAAGCCGCACGTGAAGAGACCGATGAACGCGTTTATGGTGTGGGCGCAGGCGGCGCGCAGGAAGCTCGCGGATCAATACCCGCACCTCCACAACGCCGAGCTCAGCAAAACTCTGGGCAAACTTTGGAGATTACTGAACGAGGGTGAAAAGCGTCCCTTCGTGGAAGAGGCTGAGCGCCTCAGGGTTCAGCACAAGAAAGACCACCCCGACTACAAGTACCAGCCTCGGCGGAGGAAGTCGGTGAAGAACGGGCAGAGCGAGTCCGAGGACGGCAGCGAGCAGACGCACATCTCGCCGAACGCGATCTTCAAAGCCCTCCAGCAAGCCGACTCGCCCGCATCCAGCATGGGAGAAGTTCACTCGCCCAGCGAGCACTCAGGCCAGTCCCAAGGGCCGCCCACTCCTCCCACCACCCCGAAAACTGACGTGCAGCCAGGCAAAGCGGATCTGAAGCGAGAGGCCCGTCCGCTTCAGGAAAGCACGGGACGTCCGCTCAACATCGACTTCCGCGACGTGGACATCGGCGAGCTCAGCAGCGACGTCATAGAGACGTTCGACGTCAACGAGTTCGACCAGTACCTGCCCCCGAACGGGCACAGCGGCGTGCCCAACGCGCCCTACGCGGGCGGCTACGGAACCTGGATGGGCAAGAACGGCAGCCCTCAAAGCAGCCAGCTGACCCCGCTCAGCGCCGGAGAACCGGACCAGCCGAGAACGACGCACATCAAGACCGAGCAGCTCAGTCCCAGCCACTACAACGAGCAGCAGGGCTCGCCGCAGCACGTCAGCTACGGCTCCTTCAACGTCCAGCACCTACAGCACTACAGCACTTCCTTCCCGTCGATCACCCGGGCGCAGTACGACTACTCTGACCACCAGGGCGGCGCCACCTCCTATTACACCCACGCTGGCGGTCAGAGCTCCGGCTTGTACTCCACCTTCAGCTACCAGAGGCCCATGTACACGCCCATCGCTGACTCTACAGGGGTTCCTTCCATCCCTCAGTCCAACCACAGTCCTCAGCATTGGGACCAGCAGCCGGTCTACACACAGCTGTCGAGACCCTGAGCAGAGACTGATGGGAAAGACTCATTACACATCATTCCACTCTCTTTAAAACACACACTTGAATTTTCCCCACACACACAAAACATTTGAAATGTAGGAAAGAAAGCTGGACTTTGACAAAACAAAAAAAGAAACGGCGGCTCCCAACGTGCCTTTTTAATCGCCTGAAATCGTGATTAGAATATATATATTTTTAGCCTTGATTGCAAGAAAAGAAACATTTTTTTGAGAAATGATTCCTCTGTGAGGACTTATTGATTATTGATACTTTAATATGTACTGTGTATGTTTTCTTAACATGTTCTTTTTGTATTTCCGCCGATCCGGCCTTCTGTGTTTCTTGTAGAAAAGTCTATTTTTACTAAACCACTCTTGGTAGTATGGCTTTGTTTTTCTCCCATCTTTTTTTTTTTCCCACTAATAACACCCTTTATTGTCCTCATGCGGTGCATTTTATATTTTATAGTTTGAGTTCGTACCCTTTATTTATGTTCCTGTAAAATACCGTCCCCTTCCAGCCGTTTTGTTACCAGCTCACGTCTTTATCCCCTACATCAGTGCCTGTCAAATGTTGGAAGCGAATTAGCGGGAATATCTACGTGGCAGCGGCAGCTGAGAATGTCTAACAGCATGTGTCGCAGCTCCAGGAAGTGCCCTTTGACCTCTGCTTGTCATTAGCTGCCTGCAGTCGTGCCAGTGTCATCTTACAGTACCCCCCCCTTTTGTATCCCATCTTAACCCCTTTAATTTATTTATTAGTATTAATTTTATTTCAAAGAAATTATGTGCATTTTATTCTTTAATACTTTATACAAAAAAATGAATTGTTATTTTTGCGCCTCTGAATATGGTGACATATAATCCAACTGGCCATTTAGACAGAGGGCTGGTACTTAATATGGTACGATTCTGTATTCATCATGTTTATTTATCGTATGTAGATTTTTCTATTTTAAATGTTTATTTGTCCTTATTTCTAACCAGTTGTGTAATGCACAAAATGCTGTTGCAGTTTCTAAAACAAGGCTGATTAAACTGGAAGAGTAGTAGTTTTACGATGCTCTAATTTGTTTTTAAGTAGTTTGTTCGTTAGTTAGTTAGTTTGCTTATAGATTTTTCCCTTTCCAATTTTTGTGCTTTGCTCAATGTCAGCGATCTCAGTACTGATGTTGATATCTCTTTTTTTACACAAGACTGAACAAGATTTTTTGTCTTTAAAAAGTTTAACATTTTACTGCCTTTGAAGAAGCTCATCTTTTGTATTATATTTGCAATAAA

Function

symbol description
sox9a Enables chromatin binding activity. Acts upstream of or within cartilage morphogenesis; embryonic morphogenesis; and glial cell differentiation. Located in cytoplasm. Is expressed in several structures, including brain; ectoderm; head; reproductive system; and skeletal system. Human ortholog(s) of this gene implicated in 46,XX sex reversal 2; 46,XY sex reversal 10; and campomelic dysplasia. Orthologous to human SOX9 (SRY-box transcription factor 9).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18435 SOX9; transcription factor SOX9 (SOX group E)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_05546059_05547988.mRNA True 3023 mRNA 0.49 3 5544781 5548356

Neighbor

gene id symbol gene type direction distance location
CI01000047_05247473_05248489 SSTR5 coding downstream 296100 5246963 ~ 5248681 (-)
CI01000047_05235089_05236228 SSTR2A coding downstream 308508 5234144 ~ 5236273 (-)
CI01000047_05219313_05222967 NA coding downstream 321791 5219190 ~ 5222990 (-)
CI01000047_05151314_05157285 NT5M coding downstream 386387 5149719 ~ 5158394 (-)
CI01000047_05108733_05109209 MED9 coding downstream 435525 5108004 ~ 5109256 (-)
CI01000047_05805272_05807974 NA coding upstream 256916 5805272 ~ 5807974 (-)
CI01000047_05862382_05868129 NA coding upstream 313469 5861825 ~ 5868679 (-)
CI01000047_05869347_05869519 NA coding upstream 320928 5869284 ~ 5869519 (-)
CI01000047_05958264_05971163 MAPK8B, MAPK8, MAPK8A coding upstream 409535 5957891 ~ 5971163 (-)
CI01000047_06139714_06142702 UBTD1, UBTD1A, UBTD1B coding upstream 591261 6139617 ~ 6142702 (-)
G203576 NA non-coding downstream 151444 5393098 ~ 5393337 (-)
G203574 NA non-coding downstream 153769 5390722 ~ 5391012 (-)
G203417 NA non-coding downstream 156738 5387092 ~ 5388043 (-)
G203516 NA non-coding downstream 227117 5295470 ~ 5317664 (-)
G203429 NA non-coding downstream 379912 5121926 ~ 5164869 (-)
G203709 NA non-coding upstream 90087 5638443 ~ 5638653 (-)
G203712 NA non-coding upstream 94389 5642745 ~ 5642967 (-)
G203713 NA non-coding upstream 95979 5644335 ~ 5644537 (-)
G203719 NA non-coding upstream 104389 5652745 ~ 5652958 (-)
G203720 NA non-coding upstream 104661 5653017 ~ 5654088 (-)
G203286 NA other downstream 668047 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 967816 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 1258100 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 1330351 4213409 ~ 4214085 (-)
G202944 NA other downstream 1558379 3985342 ~ 3986402 (-)
G203840 NA other upstream 370152 5918508 ~ 5927344 (-)
G203881 NA other upstream 494897 6043253 ~ 6043789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location