CI01000047_05911739_05912506 (LRRC18B, LRRC18)


Basic Information

Item Value
gene id CI01000047_05911739_05912506
gene name LRRC18B, LRRC18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5911639 ~ 5914944 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_05911739_05912506.mRNA
ATATAAATGACGCTCACTAGGTAGTTCACTAATACCAATGTAAAAAATATTCAGAAATACAGTAAAAAAAACACACAACGTTCCCTTGTTCATAGACACAATGGTGAAAGGGAAGAAGAAATCGAATGATCCATCAGGCAGAAAAATCACACTCAAGATGGCGAAGAACGCTCTGAAGGTGACTGTAGATGGCAAACGCCGCCTCGACCTCAGCAACATGGCGATCGCCACATTTCCAAAGTGCATCCTGAAGCTCTGCGACGTAGACGAGCTGGACCTCAGCCGCAACCTTCTCAAGAAGATCCCAGACACCATCGACAAGTTTGTGAACCTCCGTTTGCTGGATCTGCACAGCAACCACCTGGAGCAGGTCCCTGCGGCTATAGGCCGTCTGCCTAACCTCTACAGCCTCAACTTATGCAACAACCATCTGACCACCTTCGGCCTGCCACATGAGATCGGGCTCTTGAGGAACCTACGGATCCTCAACCTGGGAATGAATCGCATCGAGACTCTACCTCCATCTGTGGCTGCTCTCAAAGAGCTTCGCGAACTGGGGCTCTTCAACAACCTCCTGACGCATTTGCCCAAGTGCGTCCAAAACCTCCCAAAACTGCAGAAGATGAACGTCAAATCCAACCCTATCCCTACGGACGAGCCTCCAGAGGTGGACTGCATCCAGAGAGTGGAGTGTCTGTACTTAGTGAGGGAGGACTGTCTGTGTACCGACTGCCTGAAGAGGTGTAAGGAGGAAAGGGAGAAGCTAGACAATCGAATAAGTGCAGCTTCTACACTAAAGAAGTCCATCTTTGCGGGTCTCCTAACGCCAAACTCTGTAGCACAAGAGAACCAGGCTTTATGGAGGTGAACAGGTAGACTAGTCCAAATCCACATATCTCCCCATAATCAGTCTTTGTAAGATGATTTGTAATTGTGCGTGTGTGTGCAATGCAATACAATGATGATTGAGAGATGTACAAATCAAGGCCTTAACCATGTCTTGAACATTGGGGGGACCAGTTTTTTTAGAAAGCGTAAAGAAACAGAACAGTGAAGGAAATTCTAGGTCTAATTCTAGTTGGGAATTCATTTTGAACTATTTGCATTAAAATTTGCACACATGGAAAATGTAAATGTTTCTGGTTTCACCACACATTTTTAATTCAAAACGGCCATATTTGATAAAAAGTCGAGTAGTTTGCATCACTGGATGTTACTGTTGGTTGTTAAACATTTCTATTGCAAAACAGTTGACATTAAATGTTTCGCTATTTAAATCTTACCTTACTTTCTTTTAACATTAAAGTGACGCTTTGTGCTCTACTTCTGGGAACAGTAAACCCCGCCTACTTTGATTTGATTGGCCATCTCAATTATTTTGACATTGACAAGCGCTGTTACCGCTGAGGCAGACCAGACTAAAAATGTAACTTTTAAACCTTTTTTGTCATCCTAACAACATACAGCGGGCTGTATAATGGAGTGCTGCAGTGCAAGAATTTCAAAAACTGGGGGGAAAATTCATCCATTTCTAATTATTGGGGTGGACTTGTCCCCCTCAATGTCTATGGTGGTTACGGCCCTCAAAAGCCTGTTGTATCATACAAGACTTAGTGATAAACCTTCACAGAAGTTCATGTTAATGTATTTATGGAGTTGTAAGTGGTTTGTTTATCCTGCAATAGCTTCTATGTACCACTAGGGAGTAGCAAAGATCTAAACAGACTCAGTTCTCGCTGCTGCCCCCTAGAGGATCTCTAATGACATTACAATCACATCTGGAAAGTGTGAGCACTATACTTAACATGTTAAAGGGGTCAAGGTGTGGCTCTGGAAAAAGCCTTACACTACACAAATAAGTATAAATGTAAAATACTTGAAGCATCTAAGGAAATACCAAAAGACAATTAACTACTTTGGAAAGTCATTTTAAAGGGATGCACAGTCTTCTAATATGAGTTTGATGACTGTAAATGGAGAGAGAATTGAGCATAATGAAACGTATAACAACAATATCTTCCAAATACTTTTGACAGAGCTTTAACAAAAGATGTATTACGTTCACCATCATCTATTCTTGTTGTGAAGAACAAGCGCAGGTAAATACAATTATGTCCATATTGATTTTTTTTTTTTTTTTTTTCTCATTTCTCTTGAGGAACAGTTTCCTAATTAACACTCAGCTCAATTCTATTGATTTCCCCACATTGGCACTGTTTTGAAAATCTGCTCGACATGACAAGTGACATTCCCTCCGTTTAATCAGTGAATATAACAAATACACAAGATAACATTCACACCAAAATCTGTGAGAGATATTAGATCTCTAGATATATGAAATGTTCAGACTTTTTGTTCTCTTTTGGTACAGTAGAGTTAAACTCTAAAAATGCTGGGTCAAAAACAACCCAAGTTGGGCTGAAAATGGACAAACCCAGCAATTGGCTTGTTTTAACCCAGCAGTTGGGTTAAATGTTTGCCTAACCTGCTGGGTAGTTTTATTTAACTCAACTATTGTTTAAAAATTACTATATTTCTTGCTTAAAATGAACCCAAAATACATTGGAAGTGAGCATTTATTAATAAGTTTAATGAATAATAATTAAACATTTATTAAACTGCTTATTAGTATGTTCACCTTTTGATTATTATTGTTGCCTCTAGTAATTATGCGTCTGATTTTTAATTTACAACCGATTTTGGGTTCATTTTAAGCCAGACATACAGTAATTTTTAAACAACAGTTGAGTTAAATAAAACTACCCAACATGTTGGGCAAACATTTAACCCAACCACTGAGTCAAAACAAACCCAATCGCTGGGTTTGTCCATTTTCAACCCAACTTGGGTTGTTTTTAACCCAGCGTTTTTTTTAAAGTGCATGCATAATGTATTCTGAAACAACTAAGTTCCTACTATCAAACCAAATCTTGCTTAAATGCTTATTCTTAACTGGGTGAACACAAATAACCAGAGCACATGAGGTTTGAAGTATTGTTATTTGGTGCTCCACATCTTGAAATGAATCTGGAGGTCTGTAATCCGATTACTCCCACCAGAAGTCAAAGTAAACAAAACTCAGCACTGCTATTAGGCTAAAGTGGATCAAAGAGAAGCCAAAATGGTATGGAAGAACTGATATTTTACATAGAAAATAGTCTCAGACTGGTGGTCCGAGTGCAAGATCTGTAAAATAACACCAGTAACGCATTCTATGTGTGAAATTATGTTGTTTTATTCACATGTAACTACATCATCCTTATACCAGTTTAAGTCGTGATATTTCTCTCAAGTCTGCTGAAAAAA

Function

symbol description
lrrc18b Orthologous to human LRRC18 (leucine rich repeat containing 18).
lrrc18 Predicted to be located in cytoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_05911739_05912506.mRNA True 3306 mRNA 0.39 1 5911639 5914944

Neighbor

gene id symbol gene type direction distance location
CI01000047_05887388_05899310 VSTM4B coding upstream 12027 5886222 ~ 5899612 (+)
CI01000047_05856549_05859800 NA coding upstream 51697 5856115 ~ 5859942 (+)
CI01000047_05468225_05478050 NA coding upstream 433019 5467089 ~ 5479506 (+)
CI01000047_05438344_05441756 NA coding upstream 469352 5435541 ~ 5442287 (+)
CI01000047_05380032_05387598 SLC39A11 coding upstream 523387 5379365 ~ 5388252 (+)
CI01000047_05927095_05951348 ARHGAP22 coding downstream 12151 5927095 ~ 5951356 (+)
CI01000047_05983785_06007139 FRMPD2 coding downstream 68841 5983785 ~ 6007342 (+)
CI01000047_06045320_06049402 NA coding downstream 129758 6044702 ~ 6049687 (+)
CI01000047_06051877_06053164 NA coding downstream 136321 6051265 ~ 6053995 (+)
CI01000047_06058032_06060776 RBP3, IRBP coding downstream 143088 6058032 ~ 6060994 (+)
G202113 NA non-coding upstream 28842 5879824 ~ 5882797 (+)
G202111 NA non-coding upstream 41908 5861887 ~ 5869731 (+)
G202033 NA non-coding upstream 256619 5654748 ~ 5655020 (+)
G202030 NA non-coding upstream 261066 5650366 ~ 5650573 (+)
G202021 NA non-coding upstream 279221 5632215 ~ 5632418 (+)
G202063 NA non-coding downstream 40295 5955239 ~ 5958404 (+)
G202125 NA non-coding downstream 61042 5975986 ~ 5976266 (+)
G202126 NA non-coding downstream 61710 5976654 ~ 5977045 (+)
G202174 NA non-coding downstream 71587 5986531 ~ 5986834 (+)
G202175 NA non-coding downstream 74515 5989459 ~ 5989811 (+)
G201599 NA other upstream 1429182 4415813 ~ 4482457 (+)
G201387 NA other upstream 2209779 3696516 ~ 3701860 (+)
G201186 NA other upstream 2823452 3018705 ~ 3088187 (+)
G200076 NA other upstream 3333642 2520596 ~ 2577997 (+)
G200003 NA other upstream 3592677 2316863 ~ 2318962 (+)
G202382 NA other downstream 900773 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004447 lrrc18b coding NC_007123.7 CM002896.2 2428247 ~ 2430582 (+)