CI01000047_06058032_06060776 (RBP3, IRBP)


Basic Information

Item Value
gene id CI01000047_06058032_06060776
gene name RBP3, IRBP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6058032 ~ 6060994 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_06058032_06060776.mRNA
ATGGCAGGGACTGTAAGAGTTTTTGCCCTGATCATGGTCGCTTGTCGGGTTCCGCTCGTCGACACGTCATTCCAGCCTGCGCTTGTCTTGGAAATGGCTAAAATTCTGCTTGACAACTACTGCTTCCCAGAGAATCTAGTTGGTATGCAGGAGGCAATCCAACAAGCTATAAGCAGCGGAGAGATCCTACACATCTCCGATCGGAAAACACTGGCAGCTGTGCTGACTGCCGGCGTTCAAGGCGCACTCAATGACCCCAGACTGACTGTGTCTTACGAGCCTAATTATATTCTGATCACGCCACCTGCACTTCAGTCGCTGCCTACTGAACAGCTGATACGGCTAATCAGGAATACGGTTAAACTGGAGGTGATGGATAACAATGTTGGTTACCTGAGGATTGACCGCATTATAGGTCAGGAGACTGTGTCAAAACTGGGACGCCTCCTTCACGACAACATCTGGAAGAAGGTTGCGCATACGTCAGCGATGATCTTTGATCTCCGCTTCAGCACAGCGGGAGAGCTCTCTGGCCTGCCGTACATTGTTTCCTATTTTTCCGACTCTGAGCCACTTTTGCACATCGACACAATCTATGAGCGACCCACCAACACTACGAAGGAGCTATGGACAATGCCGACACTTCTGGGGGAACGATATGGGAAAAGAAAAGAGTTGATTGTTTTAATCAGCAAGCGCACCATGGGCGCGGCTGAAGCGCTCGCCTACATCTTAAAACATCTAAAAAGAGCCGTCATTGTTGGAGAAAGGTCGGCCGGAGGGTCGGTTAAGGTTGAAAAGTTAAGCGTCGGGGACTCTGGGTTTTATATCACGGTCCCTGTTGCCAGATCTGTGAACCCTGTAACAGGACAGAGCTGGGAAGTGAGCGGAGTGTCGCCATCCGTCACGGTCAACCCAAAGGAAGCAATTGGCAAAGCCAAGTCCCTCATTGTCATCAGAAAAGCAATACCGAAAGTAGTTAAAAGAGTGTCGGACATTATTAAACGATTTTATTCGTTTAAAGATAAAATCCCAGCTTTGCTGAATCAGCTCGCTAAAACAGACTTTTTCACAGTGGTTTCTGAGGAGGACTTGGCAGCAAAACTTAATTACGAGCTGCAGTCAGTCTTTGAAGACCCTCGTTTATATATCAAGACGATGCTAGGATTGTCTGACAGTGGTTTAGATACAACACCATCTTTTGATGATCTTAATGATCCATTATTCAAGTTGAAAATTCTCTCAGGAAACAATGGATATCTGCGTTTTGACAGATTCCCCGCACCCACCGTTTTGATGGGACTAGAGGATCGAATCAAGGAGAAGGTCTGGCAACCAGTCAAAGACACAGAGAACCTGATCATCGATCTGCGCTATAACACCGGTGGATCCACCGAGGCCTTGCCGATTCTGCTTTCCTACATGTTCGACACCTCCTCAAACACTCACCTCTTTTCAATCTACGACAGCGTTCGGAACGTGACTGCTGATTTTCACACCCTACGTAACATCAGTGGGCCTTCCTATGGTTCCAGAAAGGGTATTTATGTTTTGACAAGCTATTACACAGCAGAAGCTGGAGAAGAGTTTGCTTACCTGATGCAGTCCCTGCAACGAGGCACTGTTATAGGGGAAATCACCTCTGGAACTCTCCTTCACTCCAAGACTTTTCAAGTTGAAGAAACAAGCCTTGCCATCAATGTCCCCGTCATAAATTTCATTGATATACATGGGGAATGTTGGCTTGGAGGCGGTGTAGTTCCTGATGCCATCGTGCTTGCTGAAGACGCAGTTGAGCGAGCTCGTGAAATCATTGCATTTCACAAGGACATTCAGGCTTTGGTGCAAGAAGTTGGAGATCTCTTGGAAAAACATTACAGTGTAGCTGAGGTTGCAGATAAAGTGGGTAGACTGTTACAGTCCAAACTAACCGAGGGACTGTACCGGTCAGTTGTGGACTATGAATCTCTTGCATCTCAACTCACTGCGGATCTTCAAGAGACCTCGGGCGACCACAGACTGCACATTTTCTACTGTGAAACTGAACCAGAATCCCTTCACGACGTTCCCAAAATCCCTTCCCCTGAAGAAGTAGGGGTCATCATTGATGCCCTATTCAAAGTCGAGGTAATGTCTGGAAATACTGGCTATTTGAGATTCGACATGATGGAAGACATAAAGGTTCTGCGAGCAATTGGTCCCCAGCTCATCAAAGCTGTATGGAGCAAGTTGGTGAACACAGACGTGCTCATAATTGACCTGAGATACAACACGGGTGGCTATTCCACAGCTATTCCACTCATTTGCAGCTATTTTTTTGATGCACAACCCTTGAAACACCTTTACACTATTTTTGATCGCTCCACAACGACTGCGACAAAGGTTATGACCCTTCCGGAAGTGCTAGGGCAGAGGTACGGCTCTCAGAAAGACATTTATATCCTGACGAGTCACATGACTGGATCAGCCGCTGAGGCATTCGCTAGAACAATGAAAGACCTGAAAAGAGCCACTGTAATCGGAGAGCAAACTATCGGAGGAGCCCTCTCAAGTGGAACATACCAAATTGGGAATAGCATCCTGTATGCTTCCATTCCCAACCAGGCGGTTTTGAGTGCAGTCACTGGAAAAGCATGGAGTGTGTCAGGGGTTGAACCGCATATAGCAGTTCAAGCAAATGATTCACTTAATGTTGCCCAGAAAATAATTGGCACAAAGCACCAAAAGAACAATTCAGGGAAATAGAACTAGGGGCTTCGTTATTCTTTTTTTTTTTTTTTTTTTTTTACAGTAAAACACTGTAGTCAAAAGGTATTTTAAATATATTTTAGTTGTGTATGGAGTAGAAATTCATGTACCTTTTTTAAAGCTATGTCTAACATATTTCTGAAATTATTTAGCAATAATTTTCACCATTGAGTCACCAAAATGCTGTGTTTTTGTATACTCATACTAATGTGAAA

Function

symbol description
rbp3 Enables all-trans-retinol binding activity and oleic acid binding activity. Predicted to act upstream of or within proteolysis. Is expressed in pineal complex and visual system. Human ortholog(s) of this gene implicated in retinitis pigmentosa 66. Orthologous to human RBP3 (retinol binding protein 3).
irbp Enables DNA binding activity. Involved in double-strand break repair via nonhomologous end joining and telomere maintenance. Part of Ku70:Ku80 complex. Is expressed in organism. Orthologous to human XRCC6 (X-ray repair cross complementing 6).

NR:

description
RBP3-like protein-1

GO:

id name namespace
GO:0007601 visual perception biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_06058032_06060776.mRNA True 2963 mRNA 0.45 1 6058032 6060994

Neighbor

gene id symbol gene type direction distance location
CI01000047_06051877_06053164 NA coding upstream 4037 6051265 ~ 6053995 (+)
CI01000047_06045320_06049402 NA coding upstream 8345 6044702 ~ 6049687 (+)
CI01000047_05983785_06007139 FRMPD2 coding upstream 50690 5983785 ~ 6007342 (+)
CI01000047_05927095_05951348 ARHGAP22 coding upstream 106676 5927095 ~ 5951356 (+)
CI01000047_05911739_05912506 LRRC18B, LRRC18 coding upstream 143088 5911639 ~ 5914944 (+)
CI01000047_06062818_06067865 IRBP coding downstream 191 6061185 ~ 6068241 (+)
CI01000047_06086322_06106616 NA coding downstream 25328 6086322 ~ 6106722 (+)
CI01000047_06154118_06181771 MMS19 coding downstream 93124 6154118 ~ 6181892 (+)
CI01000047_06200292_06209564 PRKAR1A.S, PRKAR1AB, PRKAR1A, PRKAR1AA coding downstream 139298 6200292 ~ 6209579 (+)
CI01000047_06276613_06289736 LRRC45 coding downstream 215087 6276081 ~ 6289802 (+)
G202191 NA non-coding upstream 2782 6054989 ~ 6055250 (+)
G202189 NA non-coding upstream 15294 6042419 ~ 6042738 (+)
G202186 NA non-coding upstream 18878 6038955 ~ 6039154 (+)
G202175 NA non-coding upstream 68221 5989459 ~ 5989811 (+)
G202174 NA non-coding upstream 71198 5986531 ~ 5986834 (+)
G202187 NA non-coding downstream 72878 6133872 ~ 6134088 (+)
G202138 NA non-coding downstream 73734 6134728 ~ 6137136 (+)
G202205 NA non-coding downstream 87835 6148829 ~ 6149322 (+)
G202270 NA non-coding downstream 264541 6325535 ~ 6354043 (+)
G201599 NA other upstream 1575575 4415813 ~ 4482457 (+)
G201387 NA other upstream 2356172 3696516 ~ 3701860 (+)
G201186 NA other upstream 2969845 3018705 ~ 3088187 (+)
G200076 NA other upstream 3480035 2520596 ~ 2577997 (+)
G200003 NA other upstream 3739070 2316863 ~ 2318962 (+)
G202382 NA other downstream 754723 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004453 irbpl coding NC_007123.7 CM002896.2 2660733 ~ 2663471 (+)