CI01000047_06062818_06067865 (IRBP)


Basic Information

Item Value
gene id CI01000047_06062818_06067865
gene name IRBP
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6061185 ~ 6068241 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_06062818_06067865.mRNA
CTATAAATGCTTCATTTGTAACATCTACACTAAAAATACATGGTTATTTAAAGGTTCTTTACATCGTGTCCTAACCAGACGCGATGCGATATGATTCCAGCGACAAACACACCAGAGGCGACGCGAATACGAGACGCGATAAAGTCAATCAAACATCACAGCCAATCAGAAGAGCGCGTGGGCGGGCTCTCTCGGCAAGCTCCCGGCACTCGCAACGAAATGGGTAAGTAAATTCATGAATATTACACCATTGTAACATTATGAAAAATACATACTGAGTTACTGAAACAATCTTTGTTATATAATACACTTGTCTGTTCACAATGAGTTGACAATTTGAACGTTCTTGTTTTCTTTTTATTTATTGAAGATCTGAGGTGAATTGTTATTAATTGTTATTTAATTTGTGATTAAAATATCTTTAAATGTAATAAATGTATATATTTTTTATTCTGGCATGATTTTATAACATCATATATCAACATAGTGCAAAATGGTATTAAAATTTTATGTAGAAGTCGTTGCTTTGTTATGAGAAAGAATGTCCGGAAAAATGAATTTCATTGATGTCATTTGGAGTAACCAATATAAAGGGACCATTTTGGATCAAGTCATGCGGTCAATATCATGTGACAGGATGTGACATCATTCAGACACCTGCAAAGAACCACATGGTTGTGAAGCAAAGTAACTAACTCTCTCTTAACTATTTGAAAAATTCATTTTTTCACTTGCTCATACACATGTCCCAAAACATCAGGTCATTCGGTACAACCGCTATAAAACATGGAAAATGTTGTAATATTTTAAAAACTTGTACTGAATTCAAAATGTTTGATTGTCCTTTTGCTAGCTAACTAGATATCAGCCTGTTAGCATTGTTTGAAAATATCGTCATTTGGTATAACCAAAAGTGTCATTTGGTAAAACCGAAATTTTGGTTAAACCGAATGACTTTTTTGGTGACAAGTTTTGTCCAAAAATGACAAAAGCAGTGTTAATTGATTATAAAAACCACCTAATCTTATTGTTAACACTTAAACATAATGGAGATTTTGACGTTTTATTTTTATTTCTTTTTACACTTTTAAAAATCTTATTCGTCAACGACCTAATTGTTTTTACATAATTAGAAGAGACAATAAAAAACAATATTAATAAATAATCCATATAAATAATATTAATACTACTACTAATAATAATAATATGAAGATACTACTAATATTAATGAAAATAAACGATTATTAAAAAGGTTAATTATAACACCATTAAGGTCCTATATAGCACGTTCAAAGCATGATTCTTTATTAAACCTTATAAAAAGGGTTCTATTTAGCACCAAAACGAGTTCTGCTATTGTTACAAGCCAAAGAACCATAATTTGGTACTGTTTAGAACCATTTTAGAACTAATCCTAACCTTAACCCTTAAGAGTGTATGTAACATACATTTTAGCTTGTTATTTTCTAACTGAAGAACTTTGGCTAAGGAGATTAAGGTTTTATTGTGAAGAAAAGCTTCTTATGCATGTGTTACCAGAAACCTGACGGCTGAAGCAGACTCAGTTGACAAACCTCTCTGCAGAAGGAGAGTTCGGTTGCGCAGTATTAGCAGGAATCCGAAACTGGCCAAAATGGCTCAAACTGTAGTTCTACTAGTGCTGATCTTCAGTAATGTGGCTCACTGTGCTTTCTCTCCCACACTTATTGTGGATATGGCAAAAATACTCATGGACAACTACTGCTCACCAGAAAAGCTCGCTGGCTTGGAAGAGGCAATTGACGCTGCGAGTAGTAACACGGAGATCCTCAGCATTTCAGATCCTGCCATCCTTGCCAGTGTTCTGACTGATGGGGTTAAAAAAACAATTAGTGATTCCAGATTGAAAGTCACATACGAGCCAGGTTTCGTTCCTGCAGCGCCGCCGGCCATGCCTGACATCCCTCCGGAGCAGCTGGCCGCAATGATCAAATCCACCGTCAAAGTTGAGATCCTGGATGGCGACATTGGCTACCTGAGGATTCAGCACATCATTGGTGAGGAGATAGCTCAGAAAGTTGGGCCTGTTTTGCTGGAGCACGTCTGGGACAAAATCCTCTCAACATCCGCCATGATTCTTGACTTCCGCAATGCTGTCAGTGGTGAGCTATCCGGAATTCCATATATTGTGTCTTACTACACTGACTCTGAGCCATTAATCCACATTGATTCGGTGTACGATCGCACCTCTGACCTCACCATAGAGCTGTGGTCCATGCCGACCCTGTTGGGAAAGAGATACGGAACCTCCAAACCCTTGATGATTCTGACAAGCAAGGACACTCTTGGGGTTGCAGAAGATGTTGCTTATTGCCTTAAACACCTTAAAAGGGCCACCATTGTTGGGGAAAACACAGCTGGGGGAACTGTAAAAATGAGCAAAATTAAGGTGGGTGACACTGACTTCTATGTGTCTGTGCCAGTTGCCAAGTCTATTAACCCCATCACTGGCAAGAGCTGGGAAATCAGCGGAGTGGCACCAGATGTCGAAGTTGCTGCAGAAGATGCCCTTGAAGCTGCGATTGCAATCATTAAACTTCGTGTTGAAATCCCAGGGTTGGTTCAGGCGGCAGCCATGCTGGTTGCAGACAACTATGCATTTCCAAGTCTTGGGGAGGCTGTCGCTGAGAAGCTTGCATCTAGTGGGGAATACAGCATGATCTCCACAAAAGAAGAACTGGAAGTAAAGCTCTCTGCTGACCTCCTAAAACTGTCAGGGGACAAATGCTTGAAGACCACCAGCAATATTCCTGCACTTCCTCCAATGAATCCCACACCCGAGATGTTCATTGAGCTCATCAAAGTTTCATTCCACACTGACGTATTTGAAAACAACATTGGTTACCTTCGCTTTGACATGTTTGGAGATTTTGAACATGTTGCTGCCATTGCTCAGATCATTGTGGAACATGTCTGGAACAAAGTGGTTGACACTGACGCGCTGATCATTGATCTGAGGAACAATGTTGGTGGGCCTACCTCTTCTATTGCTGGCTTCTGCTCATACTTCTTTGATGGTGACAAGCAGATTGCGCTGGACCACATTTATGACAGACCCTCCAATACCACAAGAGATCTTCTGACCCTTACACAACTTACAGGCAAGAGATACGGCAGCAAGAAGAGTTTGATAATCCTCACCAGTGGTGTGACGGCTGGTGCTGCTGAAGAGTTTGTTTTTATCATGAAAAGGCTGGGACGTGCAATGATTATCGGTGAGGCGACCCGTGGAGGTTGTCACCCTCCAGAGACCTTCCGTGTGGGCGAAAGCGATGTCTTCCTGTCTATTCCAATCAGCCACTCAGATGCTTCTCAGGGTCCTTCCTGGGAGGGTGCTGGGATTGCCCCACACATTCCAGTGCCCGCTGATGCCGCCCTCGACACGGCAAAGGGCATCCTCAATAAGCATTTTTCCGGCCAAAAATAAGTTGTTCATCTGGGCCTGGTATGGAAGCCAAATGATATAGCAAATTAGTTATTTAGAAGGATGGCATATTTCTTTTTAGATCTGTATAAATCATTAATGTTTAGAAAGTACTCAGTTAAGCCTTCTGTTGCTAGTTCAAATCTTTTCTATTCTTTTTCTTTTTCTCTGTATTATTTCTAACCCATCCAGTCTGAAGCTTGCAATCTCTAAAGCAAATTTGGTAGAGGAGAATGCAAGTAATATTCTCAAAGTGATATTCAGATTAGGCCTGTTCTGAACTTGAAGGGTACTTTGTGAACTAGTTTACTTTGTACACATTATTCAAAATGTGTTTAAGCTTGTATATGCTTGTATTATAAACATCTACTCATGCATA
>TU229425
ATCAAGTCATGCGGTCAATATCATGTGACAGGATGTGACATCATTCAGACACCTGCAAAGAACCACATGGTTGTGAAGCAAAGTAACTAACTCTCTCTTAACTATTTGAAAAATTCATTTTTTCACTTGCTCATACACATGTCCCAAAACATCAGGTCATTCGGTACAACCGCTATAAAACATGGAAAATGTTGTAATATTTTAAAAACTTG
>TU229426
GTTTGATTGTCCTTTTGCTAGCTAACTAGATATCAGCCTGTTAGCATTGTTTGAAAATATCGTCATTTGGTATAACCAAAAGTGTCATTTGGTAAAACCGAAATTTTGGTTAAACCGAATGACTTTTTTGGTGACAAGTTTTGTCCAAAAATGACAAAAGCAGTGTTAATTGATTATAAAAACCACCTAATCTTATTGTTAACACTTAAACATAATGGAG

Function

symbol description
irbp Enables DNA binding activity. Involved in double-strand break repair via nonhomologous end joining and telomere maintenance. Part of Ku70:Ku80 complex. Is expressed in organism. Orthologous to human XRCC6 (X-ray repair cross complementing 6).

NR:

description
Irbp protein, partial

GO:

id name namespace
GO:0007601 visual perception biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_06062818_06067865.mRNA False 3842 mRNA 0.40 4 6061185 6068241
TU229425 False 212 lncRNA 0.35 1 6061790 6062001
TU229426 True 220 lncRNA 0.31 1 6062017 6062236

Neighbor

gene id symbol gene type direction distance location
CI01000047_06058032_06060776 RBP3, IRBP coding upstream 191 6058032 ~ 6060994 (+)
CI01000047_06051877_06053164 NA coding upstream 7190 6051265 ~ 6053995 (+)
CI01000047_06045320_06049402 NA coding upstream 11498 6044702 ~ 6049687 (+)
CI01000047_05983785_06007139 FRMPD2 coding upstream 53843 5983785 ~ 6007342 (+)
CI01000047_05927095_05951348 ARHGAP22 coding upstream 109829 5927095 ~ 5951356 (+)
CI01000047_06086322_06106616 NA coding downstream 18081 6086322 ~ 6106722 (+)
CI01000047_06154118_06181771 MMS19 coding downstream 85877 6154118 ~ 6181892 (+)
CI01000047_06200292_06209564 PRKAR1A.S, PRKAR1AB, PRKAR1A, PRKAR1AA coding downstream 132051 6200292 ~ 6209579 (+)
CI01000047_06276613_06289736 LRRC45 coding downstream 207840 6276081 ~ 6289802 (+)
CI01000047_06293132_06300073 RAC3B, RAC3, RAC3A, RAC1, RAC1B, RAC3.S, RAC1.L coding downstream 224891 6293132 ~ 6301265 (+)
G202191 NA non-coding upstream 5935 6054989 ~ 6055250 (+)
G202189 NA non-coding upstream 18447 6042419 ~ 6042738 (+)
G202186 NA non-coding upstream 22031 6038955 ~ 6039154 (+)
G202175 NA non-coding upstream 71374 5989459 ~ 5989811 (+)
G202174 NA non-coding upstream 74351 5986531 ~ 5986834 (+)
G202187 NA non-coding downstream 65631 6133872 ~ 6134088 (+)
G202138 NA non-coding downstream 66487 6134728 ~ 6137136 (+)
G202205 NA non-coding downstream 80588 6148829 ~ 6149322 (+)
G202270 NA non-coding downstream 257294 6325535 ~ 6354043 (+)
G202283 NA non-coding downstream 297682 6365923 ~ 6366180 (+)
G201599 NA other upstream 1578728 4415813 ~ 4482457 (+)
G201387 NA other upstream 2359325 3696516 ~ 3701860 (+)
G201186 NA other upstream 2972998 3018705 ~ 3088187 (+)
G200076 NA other upstream 3483188 2520596 ~ 2577997 (+)
G200003 NA other upstream 3742223 2316863 ~ 2318962 (+)
G202382 NA other downstream 747476 6815717 ~ 6816118 (+)

Expression


Co-expression Network