XLOC_009452 (rhoga)


Basic Information

Item Value
gene id XLOC_009452
gene name rhoga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 38201964 ~ 38218320 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018565
TAATCCTCGAACTTCTCCACTGACTTCCTCTAAGTGCACTAAACTATGCTCACTTCCTCCTACAACCCCCGGTGTCATTGTATTTAGGGACAGTTTTATTCTGACTACTATTGACAAGATCCTAGACGTTCTTTTGGATAATGCACGTGATCTGAAGGCAGAAGGACAATGCAGAACATCAAGTGTGTGGTGGTGGGAGACGGAGCTGTGGGAAAAACCTGCCTGCTGATTTCCTTCACCACAAACGCCTTTCCCAAAGAATACGTTCCCACTGTGTTTGACAATTACAGCGCACAAGTGCTCGTGGACTCAAAAACTGTCAGTCTGAACCTGTGGGATACAGCAGGACAGGAGGAGTACGACCGTTTGCGTACTCTTTCTTACCCACAGACCAACATCTTCATCATCTGTTTCAGCGTCACCAGTCCTCCATCTTTTGAGAACGTCAAGCTGAAGTGGCACCCCGAGGTGTTTGAACACTGCCCGAATGTGCCCATCCTTCTAGTGGGCACTAAGAAGGACCTGAGGGACGATCCGGAGGAGCTGAAGAAGCTGAAGGAGAAGGGTCTGTCGGTGGTGTCCCAGCAGCAGGGGACGGCGCTGGCTAGACAAATACATGCCCGGAAATACATGGAGTGTTCAGCGCTCAGCCAGGACGGGGTGAAAGAGGTCTTCACAGAAGCGGCGCGGATTTTCCTTCATCCCAAACAACCGTCCTCCAAGAAATCATGTGTGCTGCTGTAAAACTGACaggaagtcaaaatgattagccattCTCTGAATtatctttctcttctttttcaaatatt
>TCONS_00018566
TGCAGTGATCTGAAGGCAGAAGGACAATGCAGAACATCAAGTGTGTGGTGGTGGGAGACGGAGCTGTGGGAAAAACCTGCCTGCTGATTTCCTTCACCACAAACGCCTTTCCCAAAGAATACGTTCCCACTGTGTTTGACAATTACAGCGCACAAGTGCTCGTGGACTCAAAAACTGTCAGTCTGAACCTGTGGGATACAGCAGGACAGGAGGAGTACGACCGTTTGCGTACTCTTTCTTACCCACAGACCAACATCTTCATCATCTGTTTCAGCGTCACCAGTCCTCCATCTTTTGAGAACGTCAAGCTGAAGTGGCACCCCGAGGTGTTTGAACACTGCCCGAATGTGCCCATCCTTCTAGTGGGCACTAAGAAGGACCTGAGGGACGATCCGGAGGAGCTGAAGAAGCTGAAGGAGAAGGGTCTGTCGGTGGTGTCCCAGCAGCAGGGGACGGCGCTGGCTAGACAAATACATGCCCGGAAATACATGGAGTGTTCAGCGCTCAGCCAGGACGGGGTGAAAGAGGTCTTCACAGAAGCGGCGCGGATTTTCCTTCATCCCAAACAACCGTCCTCCAAGAAATCATGTGTGCTGCTGTAAAACTGACaggaagtcaaaatgattagccattCTCTGAA

Function

symbol description
rhoga Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Orthologous to human RHOG (ras homolog family member G).

GO:

id name namespace
GO:1902622 regulation of neutrophil migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0016601 Rac protein signal transduction biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-820 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Orthologous to human RHOG (ras homolog family member G).

Ensembl:

ensembl_id ENSDARG00000068653

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018565 False 809 mRNA 0.49 2 38201964 38218320
TCONS_00018566 True 640 mRNA 0.51 1 38201991 38202630

Neighbor

gene id symbol gene type direction distance location
XLOC_009451 chrna10a coding downstream 8581 38179904 ~ 38193383 (-)
XLOC_009450 si:dkey-24p1.7 coding downstream 24196 38157487 ~ 38177768 (-)
XLOC_009449 irgq2 coding downstream 47348 38150465 ~ 38154616 (-)
XLOC_009448 si:dkey-24p1.1 coding downstream 72119 38101135 ~ 38129845 (-)
XLOC_009447 si:dkey-238d18.6 coding downstream 192620 38008502 ~ 38009344 (-)
XLOC_009453 NA coding upstream 77837 38296157 ~ 38297734 (-)
XLOC_009454 trpc2a coding upstream 121066 38339386 ~ 38361787 (-)
XLOC_009455 NA coding upstream 207228 38425548 ~ 38425845 (-)
XLOC_009456 NA coding upstream 329507 38547827 ~ 38550804 (-)
XLOC_009457 NA coding upstream 683613 38901933 ~ 38910271 (-)
XLOC_009444 CR944667.3 non-coding downstream 321077 37876716 ~ 37880887 (-)
XLOC_009432 CR848836.1 non-coding downstream 472798 37727834 ~ 37729166 (-)
XLOC_009422 CR848749.2 non-coding downstream 937699 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 1327598 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 1417191 36784479 ~ 36784773 (-)
XLOC_009458 NA non-coding upstream 730103 38948423 ~ 38952429 (-)

Expression


Co-expression Network