CI01000047_06900704_06954882 (SPAG9)


Basic Information

Item Value
gene id CI01000047_06900704_06954882
gene name SPAG9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6900704 ~ 6954882 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_06900704_06954882.mRNA
ATGGAGTTAGAGGACGGTGTCCTTTACCAGGAGGACCCGGGCACTTCGGCGATGATGTCCGAGCGGGTGTCCGGCTTGGCGAGCTCCATCTACCGCGAGTTCGAGCGGATGATCGGCAAATACGACGAGGACGTGGTGAAGGAACTTATGCCGCTGGTCGTGGCGGTTCTGGAGAACTTGGACTCGGTGTTCGCGGTGAACCAGGAGCACGAGGTGGAGCTGGAGCTGCTGAAGGAGGACAACGAGCAGCTCATCACCCAGTACGAGCGCGAAAAAGCGCTGAGGAAGAGCGCAGAAGAGAGATATATTGAGTATGAGGACTTGCAAGAGCAAGACAAGAAGGATCTACAGACCCGTGTGCAGCTCCTGGAGGCTCAAACCAGACAGATGGAGCTCAAGACCAAGAACTACGCGGATCAGATTGGAAGATTAGAAGAACGTGAAGCCGAGCTGAAGAAAGAGTACAACGCCCTCCATCAGAGACACACAGAGATGATCCACAGTTACATGGAGCACTTGGAACGTACCAAATACCAGCAGCTGACGGGGGAGACGACAGACACTGGCAGTCAGAGCAGAATCAGGAAGGAGCGCCCCGTCTCTCTGGGTATTTTTTCATTGCCGGGAAGCGATGCGATGACCCCTGACCTGCATAGGGAAGCTGTGGAGACTTCAGGGACGGACACATGGAGATATAACAATCTCAGCCACCCTCGCTCCAACACCAGCCTCAAGGATGAACTGTCCGACGCTGGTAGGGGACAGTCCAAATCCGGCACACCCGTGTCTGCGGCGGCATCAGATGTGGTCATGGCGTCGGTGGAGGAGGCCGAGGGTTTGGACAAGAACCTGGACTCCAGCAGCGCTAAACCAGACAGCAGGAAGAACATCGGCGTACAGAAGGGTAATCCCGAGCGATCGGAGGTCCAGGCGATCATCGAATCCACACCAGAACTGGACATGGACCTGAGTGGATGCAAAGGCACCAGCACTCCCACTAAAGGCATAGAGAACATGGCGTTCGACCGCAACACTGACTCTCTCTTTGAGGAGCTCTCGTCTGCAGGGAATGACCTCATAGGAGACGTGGATGAAGGTGCTGATCTGCTGGGTATGGGTCGTGAAGTGGAACATCTGATCCATGAGAACACTCAGCTTCTGGAGACGAAGAACGCTCTGAATGTGGTGAAGAATGATCTGATCGCTCGTGTGGATGAGCTGGTGTGTGAGAAAGACGTTCTTCAGGGAGAGCTGGAGGTCCTGAAACAGACCAAAGACAAGCTGGAGGAGAGGAACAGAGAGCTGGAGGAGGAGCTCAAGCGGTTTGTCATTAGACACACGACACACGTCAGCGTTCCAGCCCAGGAGAAGCTCTATTTGAGTGAATCTCTCGACGTGCCCACAGCCCAGCGGAAGCGCTTCACACGGGTGGAGATGGCTCGAGTCCTGATGGAGAGAAACCAGTATAAAGAGAGGCTGATGGAGCTGCAGGAGGCCGTCAGGTGGACGGAGATGATACGAGCGTCACGAGAGAATCCAGCCTTGACGGAGAAGAAAAAGTCCAGTATCTGGCAGTTTTTCAGCAGGCTCTTCAGCTCTTCGTCCGGCGCCACAGCGAAGAAACCCGACGCACCGGTTAACTTGAAGTACAACGCTCCCACCTCACACGTGGTCCCGTCGGTGAAGAAGCGGAGCAGCACCCTCGCTCAGCTGCCCAGTGACAAATCCAAAGCCTTTGACTTCCTCAATGAGGAGGCGGAGGTGGAGAGCGTGGTGTCGCGCAGAGAGCAGAAGAGAGCTCAGTACAGACAGGTGAAGGATCACGTGCAGAAAGAGGACGGCAGGATGCAGGCGTACGGATGGAGTTTACCTCCAAAATACAAGGTTTCCAATGGTGGACAAGCAGAGAGTAAGATAAAGAATCTGCCCGTGCCCGTCTACCTGCGGCCTTTAGATGAGAAAGATGCTTCCATGAAGCTGTGGTGCGCTGCAGGAGTGAATCTGTCCGGCGGTAAGACACGAGATGGAGGCTCCATTGTGGGAGCGAGTGTGTTTTATAAAGATGTGTCTGGAGGCGAGAGCGACCCCATCGGCCCCAGGAGGAAGAGAGGCTCTCAGAGCAGCCTGGACCGACTGGAGCAGGAACTGAAGGAGAAGGAACTGAGGCATCAGGATGAACTCTCCAGCCTGGTGTGGATCTGCACCACCACACACGCCACCTCCAAGGTCATAGTCATTGACGCCAACCAGCCCGGAAACATCCTGGAGAGCTTCTTCGTCTGTAACTCTCACGTGCTGTGCATCGCCAGCGTTCCAGGCGCTTGTGAGACAGACTACCCCGCTGGAGAGGAGCTGATCGCAGACAGTGAGGGTGAAGGGGCGTCTAAAGTCAGCTGTACAGCCAGCGGTGTGTCTGCGGGCTCTGACGGGGGGCCGGATGGCATCACGGTAGTGGGCTGCTCCACAGAAGGAGCCGTGGCGATCCCTCAAACCGTCTGCACCAACTCCTTAGAATCCTCTAACTTTGGTAACGCAGCCTCCGTTTTGGGGCAGCGCAGGCAGGACGCGGTGACGGCAGCAGAAGAAGCTCTGGAGGCCACGGAAAGCACCAGTAACACGCCTGCGGATGAGAGCCAGACCGGGATCTACACCGAACACGTGTTCACCGACCCGCTGGGAGTGCAGAACAGCAGAGACACGCCGTCCAACTACACACAGAGGGAGTGTGATCTGGTGAAGGATGGCGTCAGCTCAGTGCCTGAGGAGCAGGATCTCATGAGAGAGGAAGCCAGCAAGATGAGCAGCGTTCTGCCTACAATGTGGCTCGGAGCTCAGAACGGATGCGTGTACGTTCACTCGTCTGTAGCGCAGTGGAGGAAGTGCCTTCACTCCATCAAGCTGAAGGATTCCGTCCTGGGGATTGTTCACGTGAAAGGACGTGTTCTGGTAGCTTTGGCTGATGGCACGCTTGCAATCTTCCACAGAGGTGTTGATGGCCAATGGGATTTGACCAACTATCACCTGTTAGATCTGGGCCGTCCGCATCACTCGATCCGCTGTATGACTGTCGTACATGACAAGGTCTGGTGCGGATACAGGAACAAGATCTTTGTGGTTCAACCTAAAGCCATGAAGATAGAGAAATCCTTCGACGCCCATCCTCGTAAGGAGAGCCAGGTGAGACAGCTGGCATGGGACGGAGACGGCATCTGGGTGTCCATTCGTCTGGACTCGACCCTCAGACTGTTCCACGCGCACACATACCAGCACCTGCAGGACGTCGACATCGAGCCGTACGTCAGCAAGATGCTGGGCACCGGTAAGCTGGGTTTCTCTTTCGTGAGGATCACCGCGCTGACGGTGTCGTGCAAGCGCTTGTGGGTCGGTACCGGAAACGGCGTCATCATCTCCATCCCTCTGTCAGAGAGTGATAAAGATGCAGCAGCAGCATCAAATCGGCCAGGCAGTGCGGTCCGCGTCTACGGAGACGACAGCAGTGATAAAGTCACGGCGGGCACCTTTGTGCCCTTCTGCTCCATGGCACATGCCCAGCTGTGTTTCCACGGACACAGAGACGCCGTTAAGTTCTTCACCGCCGTCCCAGGACAGGTGGTTCCGTCTGCAGGTGTCGAGGGGGCCGCTGACGAGTCGCCCACGCCGGAGCTGGTGCGGTCTGTGCTGGTCATGAGCGGAGGAGAGGGTTACATCGACTTCAGGATGGGCGACGAAGGAGGAGACACAGAAAACATGGATGAACCCACTCTGAAGCTGCAGCCCTTCCTGGCCCGAGCCGAGCGCAGTCACCTGATCGTGTGGCAGGTCATGGCCAATGAG

Function

symbol description
spag9 Predicted to enable kinesin binding activity; protein kinase binding activity; and signaling adaptor activity. Involved in lysosome localization and positive regulation of cell migration. Acts upstream of or within retrograde transport, endosome to Golgi. Located in centriolar satellite; cytosol; and lysosomal membrane. Implicated in hepatocellular carcinoma and liver cirrhosis. Biomarker of endometrial cancer.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_06900704_06954882.mRNA True 3834 mRNA 0.56 28 6900704 6954882

Neighbor

gene id symbol gene type direction distance location
CI01000047_06843638_06844618 TOB1A, TOB1, TOB1B coding downstream 56086 6843370 ~ 6844618 (-)
CI01000047_06667661_06692521 NA coding downstream 208183 6667220 ~ 6692521 (-)
CI01000047_06660338_06666635 SULT2ST1, SULT2ST2 coding downstream 234069 6660300 ~ 6666635 (-)
CI01000047_06644025_06659494 SULT2ST1, SULT2ST2 coding downstream 241010 6643750 ~ 6659694 (-)
CI01000047_06587350_06593162 NA coding downstream 307542 6587090 ~ 6593162 (-)
CI01000047_06958499_06967108 DAGLB coding upstream 3101 6957983 ~ 6967834 (-)
CI01000047_06968741_06972782 ERD2, KDELR2.L, ERD22, KDELR2, KDELR1, KDELR2A, KDELR2B coding upstream 13442 6968324 ~ 6972850 (-)
CI01000047_06978552_06982232 METTL9 coding upstream 23566 6978448 ~ 6982542 (-)
CI01000047_06993737_07007548 POLR3E coding upstream 38840 6993722 ~ 7007548 (-)
CI01000047_07010651_07017023 NA coding upstream 55647 7010529 ~ 7017023 (-)
G203947 NA non-coding downstream 2552 6896001 ~ 6898152 (-)
G204129 NA non-coding downstream 7524 6892834 ~ 6893180 (-)
G204098 NA non-coding downstream 47901 6852603 ~ 6852803 (-)
G204097 NA non-coding downstream 48866 6851639 ~ 6851838 (-)
G204095 NA non-coding downstream 50572 6849702 ~ 6850132 (-)
G204139 NA non-coding upstream 63241 7018123 ~ 7018330 (-)
G204149 NA non-coding upstream 108324 7063206 ~ 7063431 (-)
G203935 NA non-coding upstream 165571 7120453 ~ 7128069 (-)
G204167 NA non-coding upstream 329657 7284539 ~ 7285427 (-)
G204175 NA non-coding upstream 341658 7296540 ~ 7296838 (-)
G203881 NA other downstream 856915 6043253 ~ 6043789 (-)
G203840 NA other downstream 973360 5918508 ~ 5927344 (-)
G203286 NA other downstream 2023970 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 2323739 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2614023 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013081 spag9 coding CM030125.1 CM030125.1 20007617 ~ 20007958 (+)