CI01000047_06993737_07007548 (POLR3E)


Basic Information

Item Value
gene id CI01000047_06993737_07007548
gene name POLR3E
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6993722 ~ 7007548 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_06993737_07007548.mRNA
ATGGCCAGCGGAGACGATGACGATCCAATCATACAAGAGATTGACGTGTATCTGGCCAGAAGTCTCGTGGAAAAGCTGTATTTGTTCCAGTATCCGGTGCGTCCTGCAACCATGAGCTACAATAACGCGACTCATCTGGCGGCCAGAATTAAACCCAAGCAGCAGAAAGTTGAACTTGAGGTTGCGATGGATACCATGAGTCCGAACTACTGCCGCAGTAAAGGGGAGCAGATCGCCCTCAATGTGGACGGCACGTCCTCCGAAGACACCAACGTTTATTCGACGAAAATGATGGACAAGCAAACGTTCTCATCAATCCAGGCAACCACGAACACGTCCCGCTACGCTGCAGCCGTGTTCCACAAAGGAGAGCTTCATCTCACGCCGCTGCAAGGAATCCTGCAGATGAGACCGAGCTTCACATACTTGGATAAAGCTGATACTAAACACAGAGAAAGAGAGGCGGCCAATGAAGCTGGAGACTCTTCTCAGGATGAAGCAGAAGAAGACGTTAAACAAATCACTGTGAGGTTTTCCCGCCCGGAGTCAGAGCAGGCCCGTCAGCGCCGTATCCAGTCGTACGAGTTCCTGCAGAAGAAACAGGCTGAAGAGCCCTGGGTTCACCTGCACTACCACGGTCTGAAGGACGGCCGTTCTGAGCATGAGCGCCAGTATCTTTACTGCCAGGCCATGGACACCACAGAAAACACAGAGCTGGTGAAAACACCACGTGAATATCTGTCCATGCTCATGCCGCCTCTGGCTGAAGAAAAAGTCGTGAAGCCCATGGGTCCCAGTAACGTGCTCTCCATGGCTCAACTCCGCACCCTGCCTCTGGGTGATCAGGTCAAGACGCTGATGAAGAACGTCAAGGTAATGCCGTTTGCCAATCTGATGGGGCTGCTGGCGTCAGGGACGGACTCCACCTCCGTGCTGCGATGCATACAGCAGGTGGCGCTGCTGGTCCAGGGCAACTGGGTCGTGAAGAGTGACGTGCTGTATCCCAAGAACACCTGCAGTTCACACAGCGGCGTTCCTGCTGAAGTGCTCTGTCGCGGCCGAGACTTTGTGATGTGGAGATTCACTCTAGAGCGAACCCTGATGAGAAAAGAGGTCACCGCCATCATAAAGCTTCCTCCAGAGGACGTGAAGGACTTCCTGGAGCAGATGTCCGTCCCTCGATTAAACCGAGGCTGGGAGTTCCTGTTGCCCACAGATCATGATTTTGTCAGAAAGCATCCTGATGTGGCTCAGCGGCAGCACATGCTTTGGCTGGGCATTCAGTCCAAGTTGGAAAAAGTGTTCAACTTCTCCAAAGATGACTTTGTGCCTAAAAAGGATGTTCAGATGGATCCGGTTCACGTCAGCGGAGACCAGCGACTCAAAGCGGCCAGAGAGAACGCGAGGGAAAGCCACACCGTCCTGCAGAGAGAGCTGGACGCTCGCAGACTGAAGGCGTCGCGACCCCTGGGCTCCTCCGGTGAAGCCTGCGCTCCGGTGCGGGTCAAACAAGAGCCCATGAGTGACTCTGAGGAGCCCATGGACACGTCAGGCCCGCTCCTGAACGGCTCCATCAATGGTTACCCTAACTCTACCTCTCCGGACTCGGACCCTCATAACGGACACGGGGCCGGTCACGCTTTCACCCGTGAGCTGCAGGAGTTTGTGCAGAGCACCTTCAGAAAGCATTACGTTCTGTGCCTGAGCGAAGTGAAGCGGCTGTTTAACCTGCATCTGGCCAGCTTACCCACAGGTCACTCCGCGTACGGACATGTGACCGACCGCATGCTGCAGGACACCATCCTCCAGAGCCAGTGTAAACAGATCCTGGTGCCTCACCGGCAGGTTCTGTTCGAGATCTTCATGAAGAACTATCGCGTCAGAAGAAACGTGATCCAGACGCGCCTCACACAGGAACTCGGTGACGCCGTCACCAAAACCGACGTGGATCGACTGCTCAAGCTCTTACAACCAAAAAAATGGGATAAAACATGCAGACATTGTGGTTTCTGGAGCAGTTTAGATCAATTCTAAACAACAAACAATAAA

Function

symbol description
polr3e Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E).

GO:

id name namespace
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function

KEGG:

id description
K14721 RPC5, POLR3E; DNA-directed RNA polymerase III subunit RPC5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_06993737_07007548.mRNA True 2049 mRNA 0.54 19 6993722 7007548

Neighbor

gene id symbol gene type direction distance location
CI01000047_06978552_06982232 METTL9 coding downstream 11180 6978448 ~ 6982542 (-)
CI01000047_06968741_06972782 ERD2, KDELR2.L, ERD22, KDELR2, KDELR1, KDELR2A, KDELR2B coding downstream 20872 6968324 ~ 6972850 (-)
CI01000047_06958499_06967108 DAGLB coding downstream 25888 6957983 ~ 6967834 (-)
CI01000047_06900704_06954882 SPAG9 coding downstream 38840 6900704 ~ 6954882 (-)
CI01000047_06843638_06844618 TOB1A, TOB1, TOB1B coding downstream 149104 6843370 ~ 6844618 (-)
CI01000047_07010651_07017023 NA coding upstream 2981 7010529 ~ 7017023 (-)
CI01000047_07072890_07079236 GAS7B, GAS7 coding upstream 64997 7072545 ~ 7079236 (-)
CI01000047_07137958_07149332 NA coding upstream 129836 7137384 ~ 7149332 (-)
CI01000047_07350018_07350608 NA coding upstream 341583 7349131 ~ 7350844 (-)
CI01000047_07351900_07353699 NA coding upstream 344319 7351867 ~ 7353753 (-)
G203947 NA non-coding downstream 95570 6896001 ~ 6898152 (-)
G204129 NA non-coding downstream 100542 6892834 ~ 6893180 (-)
G204098 NA non-coding downstream 140919 6852603 ~ 6852803 (-)
G204097 NA non-coding downstream 141884 6851639 ~ 6851838 (-)
G204095 NA non-coding downstream 143590 6849702 ~ 6850132 (-)
G204139 NA non-coding upstream 10575 7018123 ~ 7018330 (-)
G204149 NA non-coding upstream 55658 7063206 ~ 7063431 (-)
G203935 NA non-coding upstream 112905 7120453 ~ 7128069 (-)
G204167 NA non-coding upstream 276991 7284539 ~ 7285427 (-)
G204175 NA non-coding upstream 288992 7296540 ~ 7296838 (-)
G203881 NA other downstream 949933 6043253 ~ 6043789 (-)
G203840 NA other downstream 1066378 5918508 ~ 5927344 (-)
G203286 NA other downstream 2116988 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 2416757 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2707041 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018397 polr3e,LOC106589521 coding CM030135.1 CM030135.1 9926956 ~ 9943301 (+)