CI01000047_07010651_07017023


Basic Information

Item Value
gene id CI01000047_07010651_07017023
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 7010529 ~ 7017023 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_07010651_07017023.mRNA
GCAGAGTTCTGATGGATCTCCGGAACTCCAGAGACTCTTCTGCACTTCCTTCAACCAGGACACAACTCGAGAGCCCTGATGTGTGTGTGGCGGAGCGGCTCTTCTCCAGCAGTCTGATGGTGGTCGTGAGCAGATCTACTCCGTTCCGGATGAACATCTACCATTTCAAGAAGGGCACAGAGATCTGTAACTACAGCTACTCCAACAACATCCTCGCGGTCAAGCTCAACCGTCAGAGACTCATAGTGTGTTTGGAGGAGGCCTTGTACATCCATAACATCAAGGACATGAAGCTCCTGAAGTCTCTTCTCAACACGCCACCAAACCCCAAAGGTCTCTGCGCATTATCTGTCAATCATTCCAACTCATACCTGGCGTATCCTGGGAGCTTCACCGCTGGAGAGATTACTCTGTATGATGCTGTGAATCTGAATGAGGTGACTGTGATCTCTGCCCATGCCAGTCATGTGGCCGCCATCTCATTCAACGCTTCAGGAACCAGTCTGGCCACTGCTTCTGAAAAGGGCACTGTTATACGAGTCTTCAGCGTACCTGACGGAGACAAACTGTTTGAATTCCGCAGAGGGATGAAAAGGTATGTCAGCATCAGTTCCTTGTCGTTCAGTGCCGACGCACAGTTTCTATGCGCCTCCAGTAACACAGAGACTGTTCATATCTTCAGACTGGAGCATCATAGACCCAGTCAGGAGTCTCCATCATGGTCTGGATACATGGGGAAGATGTTTTCTGCCGCCAGCACTTACCTTCCCTCTCAGGTGTCGGACATGATGCATCAGGACCGAGCGTTTGCTACCGTTCGCCTCGGCGCGGCAGGCATGAAGAATATATCCGCTCTCTCCACGATCCAGAAGGTTCCACGTCTTCTGGTGGCTTCATTAGATGGTCATCTCTACATCTACAATGTAGATCCGCAGGAAGGAGGAGACTGTCCTTTAGTCAAGAAGCACAGACTGTACGAAAGTGCTGATGAAGGTCCAGCGGCGTCGGAGCTCGAGGTCGGAAGTCCATCCTACGCAGCAACTGTTGCCACGAGCAGGAATCAAGACTCTCCGTCCTCCAGCTCCCTCACGGGATACTCTGAGGATGGAGGAGCGAAGAGAGGAGAGCTGATCCCAGAACACGAGTTTGCGGACGGACCGCTGCGTCTGGATGACGAACAGGAGTTTCCTCCCGTTAGCTTTCGGGACACCTGAAGTCCTTCTCCATCTTCATGTTCCTATTTCGGTCAGGTCTGACTGCCAGCAGGTGGCGTCGCTGAGAGATGCAGATCATTGTATGCAGTTATACACAAAATCATGTTCATCATTGAAATAAA

Function

GO: NA

KEGG:

id description
K17908 WIPI1_2, ATG18; autophagy-related protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_07010651_07017023.mRNA True 1336 mRNA 0.51 11 7010529 7017023

Neighbor

gene id symbol gene type direction distance location
CI01000047_06993737_07007548 POLR3E coding downstream 2981 6993722 ~ 7007548 (-)
CI01000047_06978552_06982232 METTL9 coding downstream 27987 6978448 ~ 6982542 (-)
CI01000047_06968741_06972782 ERD2, KDELR2.L, ERD22, KDELR2, KDELR1, KDELR2A, KDELR2B coding downstream 37679 6968324 ~ 6972850 (-)
CI01000047_06958499_06967108 DAGLB coding downstream 42695 6957983 ~ 6967834 (-)
CI01000047_06900704_06954882 SPAG9 coding downstream 55647 6900704 ~ 6954882 (-)
CI01000047_07072890_07079236 GAS7B, GAS7 coding upstream 55522 7072545 ~ 7079236 (-)
CI01000047_07137958_07149332 NA coding upstream 120361 7137384 ~ 7149332 (-)
CI01000047_07350018_07350608 NA coding upstream 332108 7349131 ~ 7350844 (-)
CI01000047_07351900_07353699 NA coding upstream 334844 7351867 ~ 7353753 (-)
CI01000047_07389650_07393323 NA coding upstream 372120 7389143 ~ 7393753 (-)
G203947 NA non-coding downstream 112377 6896001 ~ 6898152 (-)
G204129 NA non-coding downstream 117349 6892834 ~ 6893180 (-)
G204098 NA non-coding downstream 157726 6852603 ~ 6852803 (-)
G204097 NA non-coding downstream 158691 6851639 ~ 6851838 (-)
G204095 NA non-coding downstream 160397 6849702 ~ 6850132 (-)
G204139 NA non-coding upstream 1100 7018123 ~ 7018330 (-)
G204149 NA non-coding upstream 46183 7063206 ~ 7063431 (-)
G203935 NA non-coding upstream 103430 7120453 ~ 7128069 (-)
G204167 NA non-coding upstream 267516 7284539 ~ 7285427 (-)
G204175 NA non-coding upstream 279517 7296540 ~ 7296838 (-)
G203881 NA other downstream 966740 6043253 ~ 6043789 (-)
G203840 NA other downstream 1083185 5918508 ~ 5927344 (-)
G203286 NA other downstream 2133795 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 2433564 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2723848 4285227 ~ 4286694 (-)

Expression


Co-expression Network