CI01000047_07137958_07149332


Basic Information

Item Value
gene id CI01000047_07137958_07149332
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 7137384 ~ 7149332 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_07137958_07149332.mRNA
TGTTTGATTCAGGACTATAATTTAGCTTTAGGAGAGAAACATGCAGCCAAATCAGACACTGCCAGAAATTATTTATCCTTGAAGAGTCCGGCTGCGTTCCACGAACAGAGGAAAAGTCTGGAGCGATCCAAGACTGGAGATTACTTAAAACACAAAATCAGAAGTAGACCAGAGAAATCCGAGCTCGTCAACATGCATATTCTGCAAGAGCCGGCCGGTGAAGGCCTCGCACAAGACTCGCAGAACAAACTCAAGCGGGCCCGGCTCGCCGACGACCTGAACGAGAAGATCGCTCTCAGACCCGGCCCGCTGGAGCTGGTGGAGAAGAACATCATTCCTGTCCATTCCACGGTTAAAGAAGCGGCGATGAAAGTGAACCATGGGAAGCTCCCGAGGCAGGAGGACTCGTATGCGTTCGAGGAGGACAGCGGCAGCGAGAGTCTGTCTCCGGATCGCAGTGAAGAGTCGCTCACAGAGAACAAGAGCAGCGGCTCGACCTCTCCGACCCTCACCGGCACTGATCACGGCTCTCAGAGTAAAGACAGCGGCGCTCCAAACCAAGAGGAGAACATGACAAACGGCCAGGAAACTCCACCGATTCCAGTTCCTGCCTTAGTGAAGCAGTCCAAAGTGTCTGAGAAGAACCGCCACAAGAAACCCAAAGATATCAAGCCGAAAGTGAAGAAGCTGAAGTACCACCAGTACATCCCGCCGGACCAGAAGGCCGAGCGATCTCCTCCGCCGCAGATGGACTCTGCGTATGCGCTGAAGAGCAGCTACTGCAGCCCGTCCTCCATCAGCCCCGTCCGACCCGCTCCGCTGCCCGCCAACCTGGACGACCTGAAGGTGTCTGAGCTGCGGCAGCAACTGCGGATCCGCGGCCTGCCCGTGTCGGGCACCAAGACGGCGCTCATCGAACGACTGCGGCCCTTTAAAGACTCCAGCTGCGCTTCTCCGTCCGGCTCTGGAGACGTCAGCACCGCCACGTTCCCCGTGACGCCCACCGGGTCGCTGTCGTCCTATCAGTCCCCGGCGTCTCACGGGGCCGGCTTCTACCCCTTCTGCAGCAGCGGCTCCACGCCACCCATCTCGCCGGCCTCGTCCGACCTCTCCGTCAGCGGCTCGCTGCCCGACAGCTTCAGCGACGTCACCATGTCCTCGCCACAGTTCGGCCTGCAGCCCTCGCCGGACGACGGTCTGGGACTGGACGCGGAGAAGGACAAGATGCTGGTGGAGAAGCAGAAGGTGATCGAGGAGCTGACGTGGAAGCTGCACCAGGAGCAGAGGCAGGTGGAGGAGCTGCGCATGCAGCTGCACAAGAGGAAGCGCGACTGTCCCGCTCCGCCGCAGCACATGATGCACCTTCAGCCTCCGGCCCAGATGCAGCAGTTCTACGGCGTGTCGGTCAAGCAAGAGCACGTGGCCTCCAGCTGCCCGCTGTCTTCCAAGCAGATGAAAGGCGGCTGCGTGGGTCACTGCGAGCTGCAGCCTGCGCCGCACTGCCTCGAGCTGCCGCCGTCTGCGAGTCCCGTCGGCCTGTCCGCCTTCCTCAGCCCTCAGTGTTCTCCTCAAGACTCGCCCGTCACCAAACCCTCCGGCAGCCCTCAGCCCTCGTCGCCCGTCCAGCCGTACCTGCTGAGAGACGGCTGCGCACACAGACCCGCACGCAACATGCAGTTACAGCAGAAGAGCGTGGGACAGTCGGTCAGCTGCTCGTATCCGTCTGACCAGAGGAGCCTGCAGCCGCTCTACACCAGTCCATCAGAGAACAGCCTGAACCCCAGAGGATCGTCCAAGACCAAGAGCGCCAGCATGCAGCAGAAAGTATGTCTAATTCAACTGCTAATTCATCTCACTCACAAAAAGTCACATGCCAAAGCATCACATATTCTGTTCTGCACCTCCTGCAACAGTTCTCCTGCATCCGTCAGTAAACGGCCCCCGTGTTATGAGGATGCTGTGAAACAGGTAAAGCGGCCCCGGATCAGCTGGGTTTCTGGCTTCTGTCTCGCTGCTGTCCTCTCGCACCGCTCTCACGCTGCCATCAAGAGCTTCTGCTGCGTCTCTAGAGCTGTTCTCTGACGCGTTACAGTCCTGCACTCTGTGCTGCCCGAATCATTTTCTCTTTGATTAAACTACTTACCTGAAGTCCCTGTGAAACATAAAGTTAGTGTTTCAATATTTCAGTGACACATCTGCATGTTCACGGTTCTCTGATGTGGATTAATGGTCACATGACATGCAAGTAAATAGATAAAATATTGAATCTTTTATTAGTTAGTGTTTGTCTGTAGCTGGATTTTAAAGTGGACTCAAACCTCTTTTTTTAGTTACATTTACATTCACACTAGTGTTTTTGGAACACAGTCAAATTAATAATCATGTTATTATTATTATAGTTTTAAATGTAATCTTTAATCTAATGTTTAAATAAATTACTGCTGTAAATTACAATTGTACTGTAAAATAAAAATGAATAATTGATAATAATTATAATAATAATTTTATTTTACACTACAAGTTACAGTACTAATATTTATGCCTTTAATTTTTCGCTTACAAACATTCAAACCCTGAGCTTTTAACCTTTCAAATCAGAGCTTTTATTTTGGAGGAATATTGGTGAAATGCTGTAAACTTCTGGCCACAAAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_07137958_07149332.mRNA True 2656 mRNA 0.53 11 7137384 7149332

Neighbor

gene id symbol gene type direction distance location
CI01000047_07072890_07079236 GAS7B, GAS7 coding downstream 58148 7072545 ~ 7079236 (-)
CI01000047_07010651_07017023 NA coding downstream 120361 7010529 ~ 7017023 (-)
CI01000047_06993737_07007548 POLR3E coding downstream 129836 6993722 ~ 7007548 (-)
CI01000047_06978552_06982232 METTL9 coding downstream 154842 6978448 ~ 6982542 (-)
CI01000047_06968741_06972782 ERD2, KDELR2.L, ERD22, KDELR2, KDELR1, KDELR2A, KDELR2B coding downstream 164534 6968324 ~ 6972850 (-)
CI01000047_07350018_07350608 NA coding upstream 199799 7349131 ~ 7350844 (-)
CI01000047_07351900_07353699 NA coding upstream 202535 7351867 ~ 7353753 (-)
CI01000047_07389650_07393323 NA coding upstream 239811 7389143 ~ 7393753 (-)
CI01000047_07436294_07437420 NA coding upstream 286400 7435732 ~ 7437719 (-)
CI01000047_07445474_07451503 FOXK2 coding upstream 295527 7444859 ~ 7451503 (-)
G203935 NA non-coding downstream 9315 7120453 ~ 7128069 (-)
G204149 NA non-coding downstream 73953 7063206 ~ 7063431 (-)
G204139 NA non-coding downstream 119054 7018123 ~ 7018330 (-)
G203947 NA non-coding downstream 239232 6896001 ~ 6898152 (-)
G204129 NA non-coding downstream 244204 6892834 ~ 6893180 (-)
G204167 NA non-coding upstream 135207 7284539 ~ 7285427 (-)
G204175 NA non-coding upstream 147208 7296540 ~ 7296838 (-)
G204177 NA non-coding upstream 148994 7298326 ~ 7298553 (-)
G204181 NA non-coding upstream 153714 7303046 ~ 7303290 (-)
G204182 NA non-coding upstream 156647 7305979 ~ 7306594 (-)
G203881 NA other downstream 1093595 6043253 ~ 6043789 (-)
G203840 NA other downstream 1210040 5918508 ~ 5927344 (-)
G203286 NA other downstream 2260650 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 2560419 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2850703 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013130 NA coding CM030125.1 CM030125.1 21596075 ~ 21627396 (-)