CI01000047_07445474_07451503 (FOXK2)


Basic Information

Item Value
gene id CI01000047_07445474_07451503
gene name FOXK2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 7444859 ~ 7451503 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_07445474_07451503.mRNA
ATGGCGGTGAGCGGGATGTCAGGCTCGGTTGTCGCCCGGCTCGAGGGCCGAGAGTTCGAGTATCTGATGAAGAAGCGCTCGGTCACCATCGGTCGGAATTCGTCACAAGGCTCCGTGGACGTGAGCATGGGCCACTCGAGCTTTATTTCACGGAGGCACCTCGAGATTTTCTCCGCCGGCGAGGATGGAACGGGAAGCGGAGATTTCTATCTTCGATGCCTCGGCAAAAACGGGGTGTTCGTGGACGGGGTGTTCCAGAGGCGAGGGGCGCCTCCTCTGCAGCTTCCCCGCATGTGCACTTTCCGGTTTCCCAGCACAAATATCAAAATTACATTCACGGCCTTGTCCAGTGACAAGAGAGAGCGCAGGAACGCCCCGGAGTCTCCTGTGAAAGCGGTCCAACCCCAGATCTCGCCGCTGACCATCAACATTCCCGACAACATCGCCCACCTGATGAGTCCACTCCCATCTCCGACCGGCACAATCAGCGCTGCCAACTCATGTCCGTCAAGTCCGCGAGGGGCGGGGCTTTCCAGCTACAAAATGGGTCGCGGCCTCACAGCGGATCTCATCAATGAAAACTCCCAATCCGAGAACGACAAGGAAGCTTCCGGAGGAGACAGTCCGAAAGACGACTCCAAGCCTCCGTACTCGTACGCACAGCTCATTGTTCAGGCTATCACAATGGCTCCAGACAAGCAACTAACACTGAATGGAATATATACCCACATTACTAAGAATTATCCATATTACAGGACGGCAGACAAGGGCTGGCAAAACTCGATTCGTCACAATCTGTCCTTAAACCGCTATTTCATCAAAGTGCCCAGATCTCAGGAGGAGCCGGGCAAAGGCTCGTTCTGGAGGATCGACCCCTCGTCCGAGGGAAAGCTGATCGAACAAGCTTTCCGGAAGCGCCGGCCGCGCGGCGTTCCCTGCTTTAGGACTCCGCTCGGCCCGCTCTCATCCAGGAGCGCTCCAGCATCTCCTAACCACACCGGGGCGCTGTCGGCCCACTCCAGCGGCGTTCAGACTCCAGACAGCTTATCGAGAGAAGGCTCGCCTGTTCCCATGGACCCTGATCCCACGCCTGCTCCGGCTCCAGCCATTCAGCCCAAACTAGCAGTCATACAGGAGGCCTGCTTCGCACAGAACGCTCCAGGTTCACCTCTAAACACCCAACCCGTTCTCATCACAGTCCAGCGGCAGCTTCCGCAGACCATCAAACCCGTGACCTACGCTGTGGCCACACCAGTGTCCGCTGCCGCTTCCCAGCAGCCCGTCATGCAGACGCTGCACGTGGTGCATCAGATCCCTGCGGTGTCCATGGCAGCCGTGACCGGACTGTCTACGAGCAACACGCACGTGGCGGAGCCCGTGTTCACCCAGTCCAGCATCGTCACAGCAGGAGCGCACGAGAACGGAGAGCACCAGGAGGTCAAAGTGAAAGTGGAGCCGGTTCCCGCCATCACAGCCTCGTCTATAGGTGGGACGGCTCGTATTCTCCAGACGTCGCAGTCCGGCCCCATACAGACGGTCACTATAGTGGGCCAGCATCAGCTGCCCGTCAAGGCCATCACGCAGAACGGGACGCATGTGGTCACGGCGGTGCAGGGCTCCGGCAGCACGGCGAGTCCGCTGCACATGCTGGCGACGCACGCCTCGGCCTCCGCGTCCCTCCCCACCAAACGGCAGAACGGAGAGCAGGCCGAGCAGCCCGACGCCAAGAGAGTGAAGACCGAAGCCGTGCCCGTCACCGCAGAGAGAGACAAGCAGACTGACACCGACTAGGCCAGCCGTCTCTGACCTTTGACCTCAACGCGTTTTTTTGTTTCTCCCCGCCTGCCGCGCACCTGCTGCACCCGCGTCACCCGTTAATGAACCCAAGGTGCCAAATAGTGAGGTGAGATGAAATGTCAGTGGTTTTTGGAGAGATGTGAGGATTAGATTATGAGAGAAAGAGAGCGAGAGAGAGCGATGCTGTTCTGAAGGAGGAGGGAGGGACCTTTTACACCAATAGGTAAATACTCACAGATATATGCACACACATATATTAATATAGCCTACTTGAAGTTACAGAATGAAATGTATTGTTGTTCCTGTCTGGGCGTATACCCAGCAGAGAAGGTTTCCATCACGAGAGTCTCGGGCTGAACGCGGATGAAGAGCAAACAGACGAACCCCTTTTTGTGTTCCCTGAACAAACAACCGGCCAATGACCGACATAGATATTTATGTGATTGTCACGCATGTGTATCAGATGTGTGCTCGCCGTTCCCAGAGTCCTGAACATTCAACTGAGACGACAGGTCAGAAACGGACTTGCCAAACATCATTTCAGACCGATTAGCTCTTAAAATGTGAACCTGCTCACCATTTCAGCTTCATATTCACACATGGAAAAAA

Function

symbol description
foxk2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and magnesium ion binding activity. Involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Located in mitochondrion and nucleoplasm.

GO: NA

KEGG:

id description
K09404 FOXK; forkhead box protein K

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_07445474_07451503.mRNA True 2406 mRNA 0.56 9 7444859 7451503

Neighbor

gene id symbol gene type direction distance location
CI01000047_07436294_07437420 NA coding downstream 7140 7435732 ~ 7437719 (-)
CI01000047_07389650_07393323 NA coding downstream 51106 7389143 ~ 7393753 (-)
CI01000047_07351900_07353699 NA coding downstream 91106 7351867 ~ 7353753 (-)
CI01000047_07350018_07350608 NA coding downstream 94015 7349131 ~ 7350844 (-)
CI01000047_07137958_07149332 NA coding downstream 295527 7137384 ~ 7149332 (-)
CI01000047_07453486_07457736 WDR45B.S, WDR45B coding upstream 1285 7452788 ~ 7457949 (-)
CI01000047_07462130_07463407 NA coding upstream 10230 7461733 ~ 7463407 (-)
CI01000047_07511828_07514793 NA coding upstream 59452 7510955 ~ 7514793 (-)
G203943 NA non-coding downstream 76131 7355166 ~ 7368728 (-)
G204192 NA non-coding downstream 117013 7327497 ~ 7327846 (-)
G204186 NA non-coding downstream 133197 7311449 ~ 7311662 (-)
G204182 NA non-coding downstream 138265 7305979 ~ 7306594 (-)
G204181 NA non-coding downstream 141569 7303046 ~ 7303290 (-)
G203881 NA other downstream 1401070 6043253 ~ 6043789 (-)
G203840 NA other downstream 1517515 5918508 ~ 5927344 (-)
G203286 NA other downstream 2568125 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 2867894 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 3158178 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013149 foxk2,LOC107719587,LOC106601484 coding CM030125.1 CM030125.1 22276342 ~ 22292501 (+)