G200216


Basic Information

Item Value
gene id G200216
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 78005 ~ 121147 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU227206
GTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATCGCTTAATACCTCCAATGTACTCAAAGACTATACAATTTGATATGTAAATGATGCAAGAAAGAAAGAACCAATCAGAATCCAGTATATAAATATTTTAAGAAAGAAAGGTCCAATAGCACAACTGTACATAATTTTTTTACTTTCTGCATTCACTATAGAAATATACTGTGGCATAATTTGCATATATCTTTGGAATTCATTTTTATACAAGAATAAAATAAATGTGAATTACAATTTAGTCTTTTTAAATTCAGAAAGACATAATTGTCTTAAAGATGAATAAGTAAATATAATAGAAAAGAACCCAAAAACAAAACAGAACTGTGATTTATGGATTTGGCATTTTATAATCTGGCTCATGAGAGCCCTCGCGAACCCGTCCGAAGCAGCCCAGTAACAGATCCACAGCAGCGTTTACTGTTGATTTAATTTCATCCTCTGTTTTGCCCTGCTTTGGGTTCACTTCCACCATGTCTACAGCAGAGAGAAGCCCTGGAATAAAGTCAAGAAGAAAGTCAACAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU227206 True 562 lncRNA 0.33 2 78005 121147

Neighbor

gene id symbol gene type direction distance location
CI01000047_00010948_00034205 PPP1R9BB coding downstream 43509 10633 ~ 34496 (-)
CI01000047_00124354_00130228 DNAJC9 coding upstream 2856 124003 ~ 130386 (-)
CI01000047_00160239_00163260 NA coding upstream 37677 158824 ~ 163280 (-)
CI01000047_00209567_00227765 NA coding upstream 88350 209497 ~ 227765 (-)
CI01000047_00235688_00240415 TACO1 coding upstream 114369 235516 ~ 240769 (-)
CI01000047_00347663_00378777 NGFRB coding upstream 225586 346733 ~ 378777 (-)
G200247 NA non-coding downstream 5897 71907 ~ 72108 (-)
G200262 NA non-coding upstream 35060 156207 ~ 257270 (-)
G200279 NA non-coding upstream 89954 211101 ~ 211368 (-)
G200293 NA non-coding upstream 138819 259966 ~ 260170 (-)
G200298 NA non-coding upstream 146033 267180 ~ 267426 (-)
G200309 NA non-coding upstream 165811 286958 ~ 287477 (-)
G200299 NA other upstream 146383 267530 ~ 268035 (-)
CI01000047_00519408_00522108 PYYB other upstream 397961 519108 ~ 522245 (-)
G200472 NA other upstream 712794 833941 ~ 834471 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 1584921 1706068 ~ 1744282 (-)
G202733 NA other upstream 3011166 3132313 ~ 3133652 (-)

Expression


Co-expression Network