Gene
RNA
| Item | Value |
|---|---|
| gene id | G200293 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 259966 ~ 260170 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU227294 | True | 205 | lncRNA | 0.48 | 1 | 259966 | 260170 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000047_00235688_00240415 | TACO1 | coding | downstream | 19197 | 235516 ~ 240769 (-) |
| CI01000047_00209567_00227765 | NA | coding | downstream | 32201 | 209497 ~ 227765 (-) |
| CI01000047_00160239_00163260 | NA | coding | downstream | 96686 | 158824 ~ 163280 (-) |
| CI01000047_00124354_00130228 | DNAJC9 | coding | downstream | 129580 | 124003 ~ 130386 (-) |
| CI01000047_00103238_00106878 | NA | coding | downstream | 152938 | 102352 ~ 107028 (-) |
| CI01000047_00347663_00378777 | NGFRB | coding | upstream | 86563 | 346733 ~ 378777 (-) |
| CI01000047_00468782_00483200 | MPP2B, MPP2 | coding | upstream | 208238 | 468408 ~ 483200 (-) |
| CI01000047_00519408_00522108 | PYYB | coding | upstream | 259119 | 519108 ~ 522245 (-) |
| CI01000047_00532901_00545479 | NDC80 | coding | upstream | 271384 | 531554 ~ 545479 (-) |
| CI01000047_00546330_00551551 | NA | coding | upstream | 285786 | 545956 ~ 551551 (-) |
| G200262 | NA | non-coding | downstream | 2696 | 156207 ~ 257270 (-) |
| G200279 | NA | non-coding | downstream | 48598 | 211101 ~ 211368 (-) |
| G200216 | NA | non-coding | downstream | 138819 | 78005 ~ 121147 (-) |
| G200247 | NA | non-coding | downstream | 187858 | 71907 ~ 72108 (-) |
| G200298 | NA | non-coding | upstream | 7010 | 267180 ~ 267426 (-) |
| G200309 | NA | non-coding | upstream | 26788 | 286958 ~ 287477 (-) |
| G200310 | NA | non-coding | upstream | 27536 | 287706 ~ 288141 (-) |
| G200311 | NA | non-coding | upstream | 28716 | 288886 ~ 289110 (-) |
| G200307 | NA | non-coding | upstream | 45044 | 305214 ~ 306784 (-) |
| G200299 | NA | other | upstream | 7360 | 267530 ~ 268035 (-) |
| G200472 | NA | other | upstream | 573771 | 833941 ~ 834471 (-) |
| CI01000047_01708628_01744282 | BICC1B, BICC1 | other | upstream | 1445898 | 1706068 ~ 1744282 (-) |
| G202733 | NA | other | upstream | 2872143 | 3132313 ~ 3133652 (-) |
