G200307


Basic Information

Item Value
gene id G200307
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 305214 ~ 306784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU227310
CTTAATCTAAGTCCTGTCTGTGAAACCAGGCCTAACTAATATCAGGAAAATAAGTGAAATCTCAAGGTAGGCCTTTTGTTCATGGGATCCAGCTAACTTTTTTTGTTCGCAGTACGTTCTGGGAAGGTTATTTTTGGAAAAAAGAGAACGTTCTTGTTTGGTTCCCACATGGGAACATTCTGTGATAGGAAACTGAATCGTGAAAAAAATGTAAGGGCACACAAATTAAGTTTTTCTGTTTAGTGCAGATTACATTATGGGAGATTGACAATTTTTTTACAGTCTTACCATTCAAAATCAGTTTGCTATTTCTCAAAATGCACCCACTTTGAAGTTAGTGATTGAATAACATTCAGTCACTATTCTTGCTAATTTCTCCTTTATCAGTGCCAAAAACATACTGCAGACATGCAAGGATTTTTAAATTGATTTACAGCAATAAAAGAATAATAATAATAATAAAAAACAAGATTGATGAATCACCAATTTGCATGTAGTTTCCCCAAGCACTTCCCAACAAGAAGGCCAATAGTTCAAACTAATACATTTGAACATAAAGCATTTTAACCTAAACTTAAAACATCAACAAAAATCATGTGCATTAAATGAGCACATTGAATAAAGAAATACTTTGAAGTCAGATAATGCGTCACCACATTCTATAGCTTATGTTTAGCAAAAACGTATGTGCAAACAGTACAGAGCACCCAACTGATTTTACATTCATGTCCAGATTCATCTATTCAAGTATAAAATTAACATTTATATGTACAAGGTACACAATTTTAACATAAAAAAAAAAAACACAAATGTAAAGGGTGATATTCACCTTAAATCAAATGACATGAATATACCCACCCACAGTACCTAATTCAATCTTTTCAATAACTGCAACTAAATAAAGCTAAGGTAAAATATAAAAAAATAAAACAATTGCCAATTTAATTGTTCATTATAATGCTGAAGTGGGTGGTAAAATACTGATTTAAAATACAAGCACTGTCTTAATCGTACCATTTGTCTTTATATAACAACAAAATCTACTTATTCTTTCCTATTCATCATTCAATATTCAAAGGACAGCCTTTCTCTTATAAAACCGTCTATTATTATACCATAAATCTATCATGTCTGCCATTCCAATAGGATATTTTCACCACTCTCACTGTGAGCCATATAAAGAAAGCTGGCACTCTCTTATTACAATTATTTTTTAAATTAGAAAATAAATGTATACATTTTTCACTGTTCAACAATGAAAAATGTAATTTCTCGTAGTAAGGATGCTGAAGCAAGTGCAACATTACAAGCAAAGTACTGAGTGTTTTTAAAGACACGGTCACTTCATCTCTCTCTCTCTTTCTTTTCTTATCAAGTCATCACTGTCCCACCCAGCAGGACCCTGGAGAAACTGAGAGGCTGCAGATCAGGAAGTCCACTGGAGGAGGAAGGAGGGGCTTCGGGAGATTGACAGGGCAGAAGGCTGAGCCTGTGTGTGTGGTGAAGTTCACTTTGTTGGGGTCGGGGCAAGATGACACATACAAGCCTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU227310 True 1550 lncRNA 0.34 2 305214 306784

Neighbor

gene id symbol gene type direction distance location
CI01000047_00235688_00240415 TACO1 coding downstream 64445 235516 ~ 240769 (-)
CI01000047_00209567_00227765 NA coding downstream 77449 209497 ~ 227765 (-)
CI01000047_00160239_00163260 NA coding downstream 141934 158824 ~ 163280 (-)
CI01000047_00124354_00130228 DNAJC9 coding downstream 174828 124003 ~ 130386 (-)
CI01000047_00103238_00106878 NA coding downstream 198186 102352 ~ 107028 (-)
CI01000047_00347663_00378777 NGFRB coding upstream 39949 346733 ~ 378777 (-)
CI01000047_00468782_00483200 MPP2B, MPP2 coding upstream 161624 468408 ~ 483200 (-)
CI01000047_00519408_00522108 PYYB coding upstream 212505 519108 ~ 522245 (-)
CI01000047_00532901_00545479 NDC80 coding upstream 224770 531554 ~ 545479 (-)
CI01000047_00546330_00551551 NA coding upstream 239172 545956 ~ 551551 (-)
G200311 NA non-coding downstream 16104 288886 ~ 289110 (-)
G200310 NA non-coding downstream 17073 287706 ~ 288141 (-)
G200309 NA non-coding downstream 17737 286958 ~ 287477 (-)
G200298 NA non-coding downstream 37788 267180 ~ 267426 (-)
G200293 NA non-coding downstream 45044 259966 ~ 260170 (-)
G200305 NA non-coding upstream 450 307234 ~ 309179 (-)
G200316 NA non-coding upstream 6396 313180 ~ 313432 (-)
G200325 NA non-coding upstream 22622 329406 ~ 329618 (-)
G200329 NA non-coding upstream 31143 337927 ~ 338267 (-)
G200332 NA non-coding upstream 34370 341154 ~ 341480 (-)
G200299 NA other downstream 37179 267530 ~ 268035 (-)
G200472 NA other upstream 527157 833941 ~ 834471 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 1399284 1706068 ~ 1744282 (-)
G202733 NA other upstream 2825529 3132313 ~ 3133652 (-)
G202944 NA other upstream 3491019 3985342 ~ 3986402 (-)

Expression


Co-expression Network