G200305


Basic Information

Item Value
gene id G200305
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 307234 ~ 309179 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU227308
TATTGCTGTCTGTCTTGTTTATTTGGATAAGAGGAAGATAACTTCAGACAATATTGATACATGATTGATGAAGCATTTCCCTTGAGGTGTCAATATGTGTATCTGTAAAAAATATCATTTCTGGATAAAGATAGACATTCAGATTTTATAGCTTATGTGTATGTGCACACTTTCTGTTTCTTTAAGGATTTTAAATGGTGATTCACATTCACAGAAGAGTTCTTGTATCTGATGTCATGTTGAATAGAAGTGCAGCGTTTAACAAACCCAGCTGATTCGCTAGACTTTGCTCAGAAATCAGGCCTGTCCTTCTTCAGTTTAGAGTAGTCCATGTTGACAGAGAAGAGCTTGTACTGGTCATTTGGACCCAGTTTATTCCAAGGCTCTGGGTTGTTCTTGCGATCCCATGAGCAGTCAGGGTTCTTTAGAGCGATGCGGCCCAGGTAAAGCATAGACATGGTCGCTCCACCACAGCCGGGTGGCTTTTCAGTTGTTTCAGTACGGTATTCAGCATGTCAAACCCCCAAAATATTTCTATACAACAGGATTTGATGAGCGTTCGTACACTGAACTGTAGGCTATGTTTCCTGAGCGGAGTGTGAAGGGATGCCTGATACAAATGAGCTGAAGGCTTGTCCAGCTGCTCCGTTCTGGCGATAGAGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU227308 True 664 lncRNA 0.42 4 307234 309179

Neighbor

gene id symbol gene type direction distance location
CI01000047_00235688_00240415 TACO1 coding downstream 66465 235516 ~ 240769 (-)
CI01000047_00209567_00227765 NA coding downstream 79469 209497 ~ 227765 (-)
CI01000047_00160239_00163260 NA coding downstream 143954 158824 ~ 163280 (-)
CI01000047_00124354_00130228 DNAJC9 coding downstream 176848 124003 ~ 130386 (-)
CI01000047_00103238_00106878 NA coding downstream 200206 102352 ~ 107028 (-)
CI01000047_00347663_00378777 NGFRB coding upstream 37554 346733 ~ 378777 (-)
CI01000047_00468782_00483200 MPP2B, MPP2 coding upstream 159229 468408 ~ 483200 (-)
CI01000047_00519408_00522108 PYYB coding upstream 210110 519108 ~ 522245 (-)
CI01000047_00532901_00545479 NDC80 coding upstream 222375 531554 ~ 545479 (-)
CI01000047_00546330_00551551 NA coding upstream 236777 545956 ~ 551551 (-)
G200307 NA non-coding downstream 450 305214 ~ 306784 (-)
G200311 NA non-coding downstream 18124 288886 ~ 289110 (-)
G200310 NA non-coding downstream 19093 287706 ~ 288141 (-)
G200309 NA non-coding downstream 19757 286958 ~ 287477 (-)
G200298 NA non-coding downstream 39808 267180 ~ 267426 (-)
G200316 NA non-coding upstream 4001 313180 ~ 313432 (-)
G200325 NA non-coding upstream 20227 329406 ~ 329618 (-)
G200329 NA non-coding upstream 28748 337927 ~ 338267 (-)
G200332 NA non-coding upstream 31975 341154 ~ 341480 (-)
G200372 NA non-coding upstream 149741 458920 ~ 459172 (-)
G200299 NA other downstream 39199 267530 ~ 268035 (-)
G200472 NA other upstream 524762 833941 ~ 834471 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 1396889 1706068 ~ 1744282 (-)
G202733 NA other upstream 2823134 3132313 ~ 3133652 (-)
G202944 NA other upstream 3488624 3985342 ~ 3986402 (-)

Expression


Co-expression Network