Gene
RNA
| Item | Value |
|---|---|
| gene id | G200325 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 329406 ~ 329618 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU227328 | True | 213 | lncRNA | 0.24 | 1 | 329406 | 329618 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000047_00235688_00240415 | TACO1 | coding | downstream | 88637 | 235516 ~ 240769 (-) |
| CI01000047_00209567_00227765 | NA | coding | downstream | 101641 | 209497 ~ 227765 (-) |
| CI01000047_00160239_00163260 | NA | coding | downstream | 166126 | 158824 ~ 163280 (-) |
| CI01000047_00124354_00130228 | DNAJC9 | coding | downstream | 199020 | 124003 ~ 130386 (-) |
| CI01000047_00103238_00106878 | NA | coding | downstream | 222378 | 102352 ~ 107028 (-) |
| CI01000047_00347663_00378777 | NGFRB | coding | upstream | 17115 | 346733 ~ 378777 (-) |
| CI01000047_00468782_00483200 | MPP2B, MPP2 | coding | upstream | 138790 | 468408 ~ 483200 (-) |
| CI01000047_00519408_00522108 | PYYB | coding | upstream | 189671 | 519108 ~ 522245 (-) |
| CI01000047_00532901_00545479 | NDC80 | coding | upstream | 201936 | 531554 ~ 545479 (-) |
| CI01000047_00546330_00551551 | NA | coding | upstream | 216338 | 545956 ~ 551551 (-) |
| G200316 | NA | non-coding | downstream | 15974 | 313180 ~ 313432 (-) |
| G200305 | NA | non-coding | downstream | 20227 | 307234 ~ 309179 (-) |
| G200307 | NA | non-coding | downstream | 22622 | 305214 ~ 306784 (-) |
| G200311 | NA | non-coding | downstream | 40296 | 288886 ~ 289110 (-) |
| G200310 | NA | non-coding | downstream | 41265 | 287706 ~ 288141 (-) |
| G200329 | NA | non-coding | upstream | 8309 | 337927 ~ 338267 (-) |
| G200332 | NA | non-coding | upstream | 11536 | 341154 ~ 341480 (-) |
| G200372 | NA | non-coding | upstream | 129302 | 458920 ~ 459172 (-) |
| G200376 | NA | non-coding | upstream | 131812 | 461430 ~ 463091 (-) |
| G200387 | NA | non-coding | upstream | 135132 | 464750 ~ 465083 (-) |
| G200299 | NA | other | downstream | 61371 | 267530 ~ 268035 (-) |
| G200472 | NA | other | upstream | 504323 | 833941 ~ 834471 (-) |
| CI01000047_01708628_01744282 | BICC1B, BICC1 | other | upstream | 1376450 | 1706068 ~ 1744282 (-) |
| G202733 | NA | other | upstream | 2802695 | 3132313 ~ 3133652 (-) |
| G202944 | NA | other | upstream | 3468185 | 3985342 ~ 3986402 (-) |
