G200404


Basic Information

Item Value
gene id G200404
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 530604 ~ 531055 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU227425
TGGCCCACAGGACACGACGGCGCTTCTGGACCATGTTCACATATGGCTTCCTTTTTGCATGATAGAGCTTTAGTTGGCATCTACAGATGGCACGGCGGATTGTGTTTACCGACAGTGGTTTCTGGAAGTATTCCTGGGCCCATTTAGTAATGTCATTGACACAATCATGCCGATGAGTGATGCAGTGTCGTCTGAGGGCCCGAAGACCACGGGCATCCAATAAAGGTCTTCAGCCTTGTCCCTTACGCACAGAGATTTCTCCAGTTTCTCTGAATCTTTTGATGATGTTATGCACTGTAGATGATGAGGTTTGCAAAGCTTTTGCAATTTGACGTTGAGGAACATTGTTTTTAAAGTATTCCACAATCTTTTTACGCACTCTTTCACAGCTCTGCCCA
>TU227427
NGTCTGACCATAGAACACTTTTCCACTTTGAAACAGTCCATTTTAAATGAGCCTTGGCCCACAGGACACGACGGCGCTTCTGGACCATGTTCACATATGGCTTCCTTTTTGCATGATAGAGCTTTAGTTGGCATCTACAGATGGCACGGCGGATTGTGTTTACCGACAGTGGTTTCTGGAAGTATTCCTGGGCCCATTTAGTAATGTCATTGACACAATCATGCCGATGAGTGATGCAGTGTCGTCTGAGGGCCCGAAGACCACGGGCATCCAATAAAGGTCTTCAGCCTTGTCCCTTACGCACAGAGATTTCTCCAGTTTCTCTGAATCTTTTGATGATGTTATGCACTGTAGATGATGAGGTTTGCAAAGCTTTTGCAATTTGACGTTGAGGAACATTGTTTTTAAAGTATTCCACAATCTTTTTACGCACTCTTTCACAGCTCTGCCCA
>TU227424
NGTCTGACCATAGAACACTTTTCCACTTTGAAACAGTCCATTTTAAATGAGCCTTGGCCCACAGGACACGACGGCGCTTCTGGACCATGTTCACATATGGCTTCCTTTTTGCATGATAGAGCTTTAGTTGGCATCTACAGATGGCACGGCGGATTGTGTTTACCGACAGTGGTTTCTGGAAGTATTCCTGGGCCCATTTAGTAATGTCATTGACACAATCATGCCGATGAGTGATGCAGTGTCGTCTGAGGGCCCGAAGACCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU227425 False 398 lncRNA 0.46 1 530604 531001
TU227427 False 452 lncRNA 0.45 1 530604 531055
TU227424 True 264 lncRNA 0.48 1 530792 531055

Neighbor

gene id symbol gene type direction distance location
CI01000047_00519408_00522108 PYYB coding downstream 8359 519108 ~ 522245 (-)
CI01000047_00468782_00483200 MPP2B, MPP2 coding downstream 47404 468408 ~ 483200 (-)
CI01000047_00347663_00378777 NGFRB coding downstream 151827 346733 ~ 378777 (-)
CI01000047_00235688_00240415 TACO1 coding downstream 289835 235516 ~ 240769 (-)
CI01000047_00209567_00227765 NA coding downstream 302839 209497 ~ 227765 (-)
CI01000047_00532901_00545479 NDC80 coding upstream 499 531554 ~ 545479 (-)
CI01000047_00546330_00551551 NA coding upstream 14901 545956 ~ 551551 (-)
CI01000047_00558772_00579870 NA coding upstream 26997 558052 ~ 580705 (-)
CI01000047_00590846_00598816 UQCRC2B coding upstream 59590 590645 ~ 598816 (-)
CI01000047_00611745_00618340 RAC2, RAC3, RAC3A, RAC1, RAC1A, RAC1B, RAC3.S, RAC3B, RAC1.L coding upstream 79687 610742 ~ 618340 (-)
G200387 NA non-coding downstream 65521 464750 ~ 465083 (-)
G200376 NA non-coding downstream 67513 461430 ~ 463091 (-)
G200372 NA non-coding downstream 71432 458920 ~ 459172 (-)
G200332 NA non-coding downstream 189124 341154 ~ 341480 (-)
G200329 NA non-coding downstream 192337 337927 ~ 338267 (-)
G200440 NA non-coding upstream 239448 770503 ~ 770964 (-)
G200457 NA non-coding upstream 248393 779448 ~ 801732 (-)
G200459 NA non-coding upstream 249415 780470 ~ 782343 (-)
G200462 NA non-coding upstream 256319 787374 ~ 787712 (-)
G200468 NA non-coding upstream 284272 815327 ~ 816315 (-)
G200299 NA other downstream 262569 267530 ~ 268035 (-)
G200472 NA other upstream 302886 833941 ~ 834471 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 1175013 1706068 ~ 1744282 (-)
G202733 NA other upstream 2601258 3132313 ~ 3133652 (-)
G202944 NA other upstream 3266748 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 3682354 4213409 ~ 4214085 (-)

Expression


Co-expression Network