XLOC_009460


Basic Information

Item Value
gene id XLOC_009460
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 39847491 ~ 39848822 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019223
TAAGTAATTAAGAAATACGGTTCCTTGAGTTAAGTTACAGTAAAATAGCAATAGTTGAGCTACTGTACAGTGAACTGTAGAATTACTGAAAGTGTAAAGAtgctttacagtatatttattttatcttgctgTAAATTATCATGTAGGAATTTCTGTAAGCACATGACGTTTCAAACGTTAATTTACATAAAGACGATTATTCAATGTCTGACAGAAAAATATAGGAGGTATTGCAGATTAGCAAATTATAACATTAAACAGACGTCTGagtgatttgtttgtgttgatgtAGAATGCACTTTTGTCAATACAGCTTAGGTTAgatacatgtaatattaatacagtaATGTTTTCTTCTGTTCTTTTGGTGATACATTTATGAAAGTATAATTTTGAGCACACAAATCACAGAGGTAACGTGACTTGTCTGGTTGTTATAGAGAAGGAAGCACACATGTTTGTGTGTTAGCTGATGCAGAGTGACTGAACAAATGCTACCATCAtatttgtttaacaaaatattgttgtttcAAACCGCTATTACAACAATTTctttaatgttgatttatatgCCATTTCTGGGCTGGAGCAGGACTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAGTAAGATCATGTTATTACTTCCAATTCAGAACTCAAATGAAACTCAAAAGGTGTGCTGTTAAATGACTTCTTTATTAGGAGCTTTGCATAATCTGAAATGTCCTCAGACTGGTGTGTgcagtgatgatgatgaagaacagcagtgtgctgatgaagtaaatgtTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTTGAATAAGTTTGAATAAAGCTTAGTTTCGTATCTT
>TCONS_00018579
CAAGGCGTTCAGATTTGCGTGCACTATTCCACGTCGTATCCGTATAAACTCGTGAAAGAGAAAGCGAGAAATCTCCTACTGCTTCTGTCCACATTCTGAAGTGTTCATCAGATGGGTCCATCTATCACAGGAGGCCACGAAAAACCATGCGGCAAGATGATGATGCTACGTCACAATGTGGAAAACTGGATAGATTTATACATCTTACATGACTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAGTAAGATCATGTTATTACTTCCAATTCAGAACTCAAATGAAACTCAAAAGGTGTGCTGTTAAATGACTTCTTTATTAGGAGCTTTGCATAATCTGAAATGTCCTCAGACTGGTGTGTgcagtgatgatgatgaagaacagcagtgtgctgatgaagtaaatgtTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTTGAATAAGTTTGAATAAAGCTTAGTTTCGTA
>TCONS_00018580
AGAGTTTGTTGTTGACAACAACCGGTAGCGCTACGACTTTTTCAAGGCGTTCAGATTTGCGTGCACTATTCCACGTCGTATCCGTATAAACTCGTGAAAGAGAAAGCGAGAAATCTCCTACTGCTTCTGTCCACATTCTGAAGTGTTCATCAGATGGGTCCATCTATCACAGGAGGCCACGAAAAACCATGCGGCAAGATGATGATGCTACGTCACAATGTGGAAAACTGGATAGATTTATACATCTTACATGTAAGACTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAACTGGTGTGTgcagtgatgatgatgaagaacagcagtgtgctgatgaagtaaatgtTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTTGAATAAGTTTGAATAAAGCTTAGTTTCGTA

Function

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0048880 sensory system development biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0007399 nervous system development biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0001654 eye development biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0007423 sensory organ development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0150063 visual system development biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097480

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019223 False 1079 lncRNA 0.37 1 39847491 39848569
TCONS_00018579 False 693 lncRNA 0.43 2 39847495 39848780
TCONS_00018580 True 632 mRNA 0.44 3 39847495 39848822

Neighbor

gene id symbol gene type direction distance location
XLOC_009459 robo1 coding downstream 27000 39277099 ~ 39820491 (-)
XLOC_009458 NA coding downstream 895062 38948423 ~ 38952429 (-)
XLOC_009457 NA coding downstream 937220 38901933 ~ 38910271 (-)
XLOC_009456 NA coding downstream 1296687 38547827 ~ 38550804 (-)
XLOC_009455 NA coding downstream 1421646 38425548 ~ 38425845 (-)
XLOC_009461 msh5 coding upstream 85473 39934295 ~ 39955785 (-)
XLOC_009462 lypc coding upstream 108987 39957809 ~ 39963009 (-)
XLOC_009463 rps5 coding upstream 116121 39964943 ~ 39971756 (-)
XLOC_009464 NA coding upstream 154042 40002864 ~ 40006538 (-)
XLOC_009465 lpar5b coding upstream 191333 40040155 ~ 40041455 (-)
XLOC_009453 NA non-coding downstream 1549757 38296157 ~ 38297734 (-)
XLOC_009467 CR759918.2 non-coding upstream 220189 40069011 ~ 40069127 (-)
XLOC_009468 CR388129.1 non-coding upstream 276587 40125409 ~ 40129541 (-)
XLOC_009471 BX571794.3 non-coding upstream 507557 40356379 ~ 40360753 (-)
XLOC_009472 NA non-coding upstream 1219952 41068774 ~ 41072197 (-)

Expression


Co-expression Network