G200459


Basic Information

Item Value
gene id G200459
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 780470 ~ 782343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU227485
TTTCTTTTACTTTATTTTTTTTTATTGTGGGCCCAGTCAAGATTTTTCCAGGGCAAGTAAAAATTTGAACCACTGGCCCAACCGGGCCAGCAGAAAAAATCCTTAGCGTTGAGCCCTGCTTTTACATTCACAAAAGGCTACAGTACACACTACATGAAAGGTAGTATCTGAAAAAGCACAATGGGGCACTTTAAAATAGAAGATAAATTAAGCAGAACAAAGTGTGGTGACATGGTGTTGGGCTAACAAAGTTCTGCTATTCTTTTGCTTCCTTGTTTTATTGAGGTGACTGCCTTAACTGAAAATGTAAAGTAACTCATTACAAAACATTATGGGCCAGATTTACTAACAGCTTGCACCAGCGCAAACCCTCTTTTGGCGTTAGAAACTTCTGTCAGGATTTACTAAAGACATGCAGTGAAAAATCAGCACTGAAAAGGCGGCTGTCTGTTATTGCATATGCATTTGTAGGAGTTTACCTTTCAGATGCAAAATTTATGGGAGGAGAATGTTTAAATGAATCATGCAAGGTAATTTACTAAGGTTTGCGCTAGTCAATTTACTGGTATTTGCGCCATTATTTACCACCCAAAAAAAGCATGTCTTAAACCAAACGCTAATTTGTGCTGCTCTTGGTAAATTGCGTTGGTCATTATGGAAATGATCCGGCTGCGTCTGTGTCCTTTAATTTGTGTGTCGTCAGTAGATCATGCGCAGAACTTTCCACTCTCATCTGAGCTTTTTTGGATTTGCTCTCTCAAGCTAATTTGTGCCGTTTAGTAAATCCGGCCCCCAAGAATCATGATAAGAATAATAAACTCAAGAAGGTTCCAAAATTTACTCTGAAGCTCTGTTCAAAGATCCATTCAGACAGGATAAATGGTTTGTCCCTCTACGACTCACATGTGAGTATCAGCAGAAGCAGGTGCTTCCTCTGTTCACAGGAGTGTTTGTGTCAGAGGCAGAACTTGCTTTGAAACTACTTTATGAGACATACTGGAAATGTAGCATCTGAACAGTGTCAGTAATTAGCATGGGGTCATATGAAGCAAACTGCATTAAGTGATCTCAACCAAAACTAGACAAAAATAAAGATATTCATAATAACAAATTAGCAAAGTCTTGGATAGCTCAACGCTAGTAAATCCGCCAGCTGGCTCTCTCTATCGGATGCCAAGAAGAAGGTTCGGATGAAATCCAGGTTGCCATTGGCAACACGGCCTCAACGTCTAGACTGAATGGCAACCTTTAAAATGGCACTACACAATGTTGCAAGTTCTGAGTGATTTTTACCACAATATGATACAATTGCTAGGGTGTTCTGAGTGGTTGAGAAACCAGATTTGAAATGTTCACAAAATATTTTCAAAAATCTATTTTCTAACTGAATAGAGGAAATGATGAGTGAGCACCAGATCTTTTCAATGGTCCACAACAGCCAAATATAAACTAAACAGCCCCAGTGTTAATTTCTTGTTTTTGTCATTGTTTCTTGTTTGACGAAAATAGCCTTTAAATTAAGTTGTCGTATGCACACACACACACACACAAAAAGTACTTTAGTTTACCAGTGTTCATTCACTGTTTGGCTACAGCTCATGCTTATCAAACTGGTCAATAGAGTGCATTAGAGCCCGTCCACTAAGAACTTTTTCCATTGGGATTTTTTTTTTTTTTTTAAAAAGTCTTTGTTACAGCGTTATAAGCCAGGAACCAAACCAACAAGCAACGAGGTGACTTTTAAACATTGCTTCCAATTAGTTTGTAATAAGAATTTTAAAAAGAGAAAAGAGAAGGATTTAATGGCTTTAAAGGGTTATTAGTTCAGTGTTTCCCAACCTTTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU227485 True 1846 lncRNA 0.38 2 780470 782343

Neighbor

gene id symbol gene type direction distance location
CI01000047_00701972_00715090 GCP2, TUBGCP2 coding downstream 65380 701972 ~ 715090 (-)
CI01000047_00654212_00689092 MYOF coding downstream 91378 653448 ~ 689092 (-)
CI01000047_00620874_00645283 NA coding downstream 135187 620756 ~ 645283 (-)
CI01000047_00611745_00618340 RAC2, RAC3, RAC3A, RAC1, RAC1A, RAC1B, RAC3.S, RAC3B, RAC1.L coding downstream 162130 610742 ~ 618340 (-)
CI01000047_00590846_00598816 UQCRC2B coding downstream 181654 590645 ~ 598816 (-)
CI01000047_00884469_00889027 NA coding upstream 101355 883698 ~ 889027 (-)
CI01000047_00892063_00896561 NA coding upstream 108290 890633 ~ 896561 (-)
CI01000047_01071329_01073839 NRBF2B, NRBF2 coding upstream 287959 1070302 ~ 1073839 (-)
CI01000047_01119401_01120162 ADOA coding upstream 336809 1119152 ~ 1120233 (-)
CI01000047_01175229_01292056 ARID5B coding upstream 392245 1174588 ~ 1292056 (-)
G200440 NA non-coding downstream 9506 770503 ~ 770964 (-)
G200404 NA non-coding downstream 249415 530604 ~ 531055 (-)
G200387 NA non-coding downstream 315387 464750 ~ 465083 (-)
G200376 NA non-coding downstream 317379 461430 ~ 463091 (-)
G200372 NA non-coding downstream 321298 458920 ~ 459172 (-)
G200462 NA non-coding upstream 5031 787374 ~ 787712 (-)
G200468 NA non-coding upstream 32984 815327 ~ 816315 (-)
G200469 NA non-coding upstream 34266 816609 ~ 817078 (-)
G200470 NA non-coding upstream 50843 833186 ~ 833457 (-)
G200471 NA non-coding upstream 51167 833510 ~ 833867 (-)
CI01000047_00519408_00522108 PYYB other downstream 258228 519108 ~ 522245 (-)
G200299 NA other downstream 512435 267530 ~ 268035 (-)
G200472 NA other upstream 51598 833941 ~ 834471 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other upstream 923725 1706068 ~ 1744282 (-)
G202733 NA other upstream 2349970 3132313 ~ 3133652 (-)
G202944 NA other upstream 3015460 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 3431066 4213409 ~ 4214085 (-)

Expression


Co-expression Network