Gene
RNA
| Item | Value |
|---|---|
| gene id | G200652 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 1323497 ~ 1323757 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| Transposable element Tcb2 transposase |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU227685 | True | 261 | lncRNA | 0.33 | 1 | 1323497 | 1323757 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000047_01175229_01292056 | ARID5B | coding | downstream | 31441 | 1174588 ~ 1292056 (-) |
| CI01000047_01119401_01120162 | ADOA | coding | downstream | 203264 | 1119152 ~ 1120233 (-) |
| CI01000047_01071329_01073839 | NRBF2B, NRBF2 | coding | downstream | 249658 | 1070302 ~ 1073839 (-) |
| CI01000047_00892063_00896561 | NA | coding | downstream | 426936 | 890633 ~ 896561 (-) |
| CI01000047_00884469_00889027 | NA | coding | downstream | 434470 | 883698 ~ 889027 (-) |
| CI01000047_01337067_01353593 | NA | coding | upstream | 13212 | 1336969 ~ 1353593 (-) |
| CI01000047_01373782_01374697 | NA | coding | upstream | 50025 | 1373782 ~ 1374854 (-) |
| CI01000047_01375108_01392690 | RHOBTB1.S, RHOBTB2, RHOBTB1 | coding | upstream | 51156 | 1374913 ~ 1392690 (-) |
| CI01000047_01404421_01451987 | NA | coding | upstream | 80614 | 1404371 ~ 1452053 (-) |
| CI01000047_01470439_01470729 | NA | coding | upstream | 146642 | 1470399 ~ 1470794 (-) |
| G200626 | NA | non-coding | downstream | 180940 | 1134145 ~ 1142557 (-) |
| G200609 | NA | non-coding | downstream | 225603 | 1097661 ~ 1097894 (-) |
| G200607 | NA | non-coding | downstream | 231234 | 1091884 ~ 1092263 (-) |
| G200479 | NA | non-coding | downstream | 475430 | 847843 ~ 848067 (-) |
| G200471 | NA | non-coding | downstream | 489630 | 833510 ~ 833867 (-) |
| G200657 | NA | non-coding | upstream | 3637 | 1327394 ~ 1327615 (-) |
| G200678 | NA | non-coding | upstream | 35633 | 1359390 ~ 1359612 (-) |
| G200681 | NA | non-coding | upstream | 42983 | 1366740 ~ 1367087 (-) |
| G200682 | NA | non-coding | upstream | 43367 | 1367124 ~ 1367339 (-) |
| G200763 | NA | non-coding | upstream | 132426 | 1456183 ~ 1456534 (-) |
| G200472 | NA | other | downstream | 489026 | 833941 ~ 834471 (-) |
| CI01000047_00519408_00522108 | PYYB | other | downstream | 801255 | 519108 ~ 522245 (-) |
| G200299 | NA | other | downstream | 1055462 | 267530 ~ 268035 (-) |
| CI01000047_01708628_01744282 | BICC1B, BICC1 | other | upstream | 382311 | 1706068 ~ 1744282 (-) |
| G202733 | NA | other | upstream | 1808556 | 3132313 ~ 3133652 (-) |
| G202944 | NA | other | upstream | 2474046 | 3985342 ~ 3986402 (-) |
| CI01000047_04213574_04213976 | NA | other | upstream | 2889652 | 4213409 ~ 4214085 (-) |
| CI01000047_04285605_04286644 | COA3A | other | upstream | 2955151 | 4285227 ~ 4286694 (-) |
